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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.0 nTPM
HPA:11.0 nTPM
GTEx:10.5 nTPM
FANTOM5:17.5 Scaled Tags Per Million
Pig:6.0 nTPM
Mouse:8.6 nTPM
Allen mouse:4.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.6
2019 Male, age 18, unknown 11.4
2411 Female, age 72, unknown 10.2
2586 Male, age 75, left hemisphere 9.7
2666 Male, age 74, left hemisphere 9.7
1827 Male, age 72, unknown 9.5
2219 Male, age 76, both hemispheres 9.5
2828 Female, age 72, unknown 9.3
1870 Female, age 42, unknown 9.0
1833 Male, age 53, unknown 8.8
1830 Male, age 51, unknown 8.7
Dorsal raphe nucleus
nTPM: 9.7
1828 Male, age 53, unknown 11.0
2047 Male, age 72, unknown 10.3
2750 Male, age 76, both hemispheres 9.7
2298 Female, age 72, unknown 9.1
2016 Female, age 72, unknown 8.3
Inferior colliculus
nTPM: 9.2
2097 Female, age 72, unknown 10.2
1890 Male, age 53, unknown 9.9
1848 Female, age 42, unknown 8.8
2849 Male, age 72, unknown 7.9
Median raphe nucleus
nTPM: 9.5
2220 Male, age 76, midline 9.5
Pedunculopontine tegmental nucleus
nTPM: 10.4
2338 Male, age 61, both hemispheres 10.7
2334 Male, age 80, both hemispheres 10.5
1921 Female, age 85, both hemispheres 9.9
Periaquaductal grey, anterior
nTPM: 9.6
1947 Male, age 18, unknown 10.0
2502 Female, age 75, unknown 9.7
1795 Male, age 51, unknown 9.1
Periaquaductal grey, dorsal
nTPM: 8.5
1831 Male, age 72, unknown 8.9
2850 Male, age 76, both hemispheres 8.6
2464 Female, age 72, unknown 8.5
1840 Male, age 53, unknown 8.1
Periaquaductal grey, lateral
nTPM: 8.7
2272 Male, age 74, both hemispheres 9.2
2053 Male, age 18, unknown 8.6
2140 Male, age 76, both hemispheres 8.4
Pretectal area
nTPM: 9.9
2007 Male, age 72, unknown 12.5
1817 Female, age 42, unknown 12.0
1816 Male, age 51, unknown 11.4
1815 Male, age 53, unknown 11.2
1944 Female, age 72, unknown 10.6
2316 Male, age 76, right hemisphere 9.1
2667 Female, age 75, unknown 9.1
2273 Male, age 74, both hemispheres 8.8
2224 Female, age 72, unknown 8.5
2407 Male, age 75, both hemispheres 8.2
2825 Male, age 18, unknown 7.6
Red nucleus
nTPM: 9.9
2588 Male, age 74, left hemisphere 11.4
2503 Female, age 72, unknown 10.8
2823 Male, age 76, right hemisphere 10.8
2785 Male, age 18, unknown 10.7
2725 Female, age 75, unknown 10.5
1821 Female, age 72, unknown 10.2
1865 Male, age 51, unknown 9.7
1954 Female, age 42, unknown 9.4
1904 Male, age 53, unknown 9.0
2769 Male, age 72, unknown 9.0
2227 Male, age 72, unknown 8.7
2584 Male, age 75, left hemisphere 8.6
Substantia nigra
nTPM: 11.0
1916 Female, age 42, unknown 12.8
2409 Female, age 72, unknown 12.5
1851 Male, age 51, unknown 12.1
2241 Male, age 72, unknown 12.0
1889 Female, age 72, unknown 11.0
1941 Male, age 53, unknown 10.6
2699 Male, age 18, unknown 10.2
2590 Female, age 75, unknown 10.1
2665 Male, age 74, both hemispheres 9.6
2583 Male, age 75, right hemisphere 8.8
Superior colliculus
nTPM: 9.3
2587 Male, age 74, left hemisphere 10.5
2087 Female, age 72, unknown 10.2
2668 Female, age 75, unknown 9.9
1796 Male, age 53, unknown 9.7
2261 Male, age 18, unknown 9.7
1895 Male, age 76, right hemisphere 9.0
1913 Female, age 42, unknown 9.0
1839 Male, age 51, unknown 8.6
1995 Male, age 72, unknown 8.6
2664 Male, age 75, both hemispheres 7.7
Ventral tegmental area
nTPM: 10.2
2410 Female, age 72, unknown 11.8
2218 Male, age 76, both hemispheres 10.8
1915 Female, age 42, unknown 10.5
1942 Male, age 51, unknown 9.9
2223 Female, age 72, unknown 9.5
2021 Male, age 53, unknown 8.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.5
Samples: 139

Max nTPM: 22.0
Min nTPM: 4.9
Std nTPM: 3.2
Median nTPM: 9.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 22.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 20.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 19.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 19.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 18.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 18.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 17.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 17.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 16.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 16.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 16.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.5
FF:10158-103A5 76 years, female 17.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.0
Pig sample Sample description nTPM
Midbrain
nTPM: 4.9
Samples: 4

Max nTPM: 5.5
Min nTPM: 3.8
Sample A Female 5.5
Sample B Female 4.9
Sample C Male 5.2
Sample D Male 3.8
Periaqueductal gray
nTPM: 4.9
Samples: 3

Max nTPM: 6.3
Min nTPM: 4.2
Sample B Female 4.3
Sample C Male 6.3
Sample D Male 4.2
Substantia nigra
nTPM: 5.4
Samples: 4

Max nTPM: 5.9
Min nTPM: 3.9
Sample A Female 5.9
Sample B Female 5.8
Sample C Male 5.9
Sample D Male 3.9
Superior colliculi
nTPM: 6.0
Samples: 4

Max nTPM: 9.5
Min nTPM: 4.2
Sample A Female 5.1
Sample B Female 9.5
Sample C Male 5.3
Sample D Male 4.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.6
Samples: 4

Max nTPM: 9.2
Min nTPM: 7.9
Sample A Male 8.9
Sample B Male 7.9
Sample C Female 8.2
Sample D Female 9.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.1
1938 Antisense, RP_040604_02_A08, Mouse strain C57BL/6J (56 days, male) 4.1
1939 Antisense, RP_040604_02_A08, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.