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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:37.1 nTPM
HPA:37.1 nTPM
GTEx:39.4 nTPM
FANTOM5:101.5 Scaled Tags Per Million
Pig:90.2 nTPM
Mouse:54.0 nTPM
Allen mouse:4.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA036290
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 36.3
1857 Female, age 85, left hemisphere 40.9
2290 Female, age 72, unknown 39.6
2846 Female, age 79, unknown 38.4
1854 Male, age 80, left hemisphere 36.4
2288 Male, age 75, left hemisphere 35.7
2289 Male, age 61, right hemisphere 34.5
1781 Male, age 74, unknown 33.9
2481 Female, age 94, left hemisphere 30.8
Claustrum
nTPM: 37.1
2645 Female, age 72, unknown 41.0
2568 Male, age 61, both hemispheres 39.6
2198 Male, age 80, both hemispheres 39.3
1956 Male, age 74, unknown 37.7
2284 Female, age 91, both hemispheres 37.3
2196 Female, age 79, unknown 36.1
2292 Female, age 85, both hemispheres 35.9
2392 Female, age 94, both hemispheres 33.9
2491 Male, age 75, both hemispheres 33.5
Globus pallidus, externus
nTPM: 32.0
2567 Female, age 72, unknown 33.2
2395 Male, age 75, both hemispheres 32.9
2646 Male, age 61, right hemisphere 32.2
2772 Female, age 79, unknown 31.1
1996 Male, age 80, right hemisphere 30.5
Globus pallidus, internus
nTPM: 32.2
2287 Male, age 75, right hemisphere 34.9
2483 Female, age 94, right hemisphere 33.6
1818 Male, age 74, unknown 32.7
2111 Female, age 85, right hemisphere 32.5
2566 Female, age 72, unknown 30.8
2778 Female, age 91, both hemispheres 30.5
2037 Male, age 80, right hemisphere 30.0
Nucleus accumbens
nTPM: 35.4
1806 Female, age 85, left hemisphere 40.5
1783 Male, age 74, unknown 40.1
2824 Male, age 61, right hemisphere 38.0
1856 Female, age 91, right hemisphere 36.7
2286 Male, age 75, left hemisphere 34.2
2698 Female, age 72, unknown 33.6
2391 Female, age 94, left hemisphere 30.8
2732 Male, age 80, right hemisphere 29.3
Nucleus basalis of Meynert
nTPM: 34.0
2393 Male, age 80, right hemisphere 37.2
2484 Female, age 94, left hemisphere 34.3
2569 Male, age 61, both hemispheres 34.0
2821 Male, age 75, both hemispheres 30.3
Nucleus of the diagonal band
nTPM: 31.6
2775 Male, age 80, right hemisphere 33.4
1812 Female, age 91, both hemispheres 32.8
2029 Male, age 61, right hemisphere 32.6
2195 Female, age 85, both hemispheres 30.9
1979 Male, age 74, unknown 28.4
Olfactory tubercle
nTPM: 33.2
1846 Male, age 80, right hemisphere 33.8
2487 Female, age 94, left hemisphere 33.1
1998 Female, age 91, both hemispheres 32.9
2856 Male, age 75, right hemisphere 32.8
Putamen
nTPM: 36.8
1838 Male, age 80, right hemisphere 40.6
1829 Male, age 74, unknown 37.8
2466 Female, age 79, unknown 37.7
2489 Female, age 72, unknown 36.8
2647 Male, age 75, left hemisphere 36.5
1937 Female, age 91, right hemisphere 36.1
2482 Female, age 94, left hemisphere 32.1
Septal nuclei
nTPM: 30.3
2031 Female, age 72, unknown 34.0
1960 Male, age 74, unknown 33.5
2059 Female, age 85, both hemispheres 30.3
2394 Male, age 61, left hemisphere 29.4
2009 Female, age 91, both hemispheres 29.2
2629 Female, age 94, right hemisphere 29.0
2199 Male, age 80, right hemisphere 26.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 39.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 38.0
Samples: 246

Max nTPM: 75.7
Min nTPM: 24.8
Std nTPM: 6.9
Median nTPM: 36.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 75.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 59.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 56.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 56.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 56.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 56.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 55.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 54.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 52.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 51.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 51.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 39.4
Samples: 246

Max nTPM: 61.6
Min nTPM: 16.0
Std nTPM: 7.2
Median nTPM: 38.5
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 61.6
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 60.1
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 56.9
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 56.4
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 56.3
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 55.9
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 55.2
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 53.7
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 53.6
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 53.1
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 52.4
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Brain - Putamen (basal ganglia)
Average nTPM: 38.8
Samples: 205

Max nTPM: 62.3
Min nTPM: 27.1
Std nTPM: 6.1
Median nTPM: 38.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 62.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 62.0
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 58.6
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 54.2
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 53.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 52.9
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 51.5
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 51.0
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 50.9
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 50.5
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 50.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 101.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 99.6
FF:10164-103B2 76 years, female 99.6
Globus pallidus
Scaled Tags Per Million: 71.7
FF:10161-103A8 76 years, female 90.5
FF:10175-103C4 60 years, female 52.8
Nucleus accumbens
Scaled Tags Per Million: 101.5
FF:10037-101F1 23-56 years, mixed 101.5
Putamen
Scaled Tags Per Million: 100.4
FF:10176-103C5 60 years, female 100.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 90.2
Pig sample Sample description nTPM
Caudate
nTPM: 84.5
Samples: 4

Max nTPM: 104.2
Min nTPM: 69.3
Sample A Female 69.3
Sample B Female 81.2
Sample C Male 104.2
Sample D Male 83.1
Putamen
nTPM: 90.2
Samples: 4

Max nTPM: 124.5
Min nTPM: 59.8
Sample A Female 59.8
Sample B Female 81.4
Sample C Male 124.5
Sample D Male 94.9
Septum
nTPM: 62.5
Samples: 4

Max nTPM: 71.9
Min nTPM: 49.7
Sample A Female 71.9
Sample B Female 70.7
Sample C Male 49.7
Sample D Male 57.5
Ventral pallidum
nTPM: 75.6
Samples: 4

Max nTPM: 80.5
Min nTPM: 71.3
Sample A Female 80.5
Sample B Female 76.5
Sample C Male 71.3
Sample D Male 73.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 54.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 54.1
Samples: 4

Max nTPM: 58.0
Min nTPM: 51.5
Sample A Male 51.5
Sample B Male 52.6
Sample C Female 54.1
Sample D Female 58.0
Septum
nTPM: 47.5
Samples: 4

Max nTPM: 53.9
Min nTPM: 41.4
Sample A Male 41.4
Sample B Male 53.9
Sample C Female 45.9
Sample D Female 48.8
Ventral forebrain
nTPM: 52.1
Samples: 4

Max nTPM: 53.1
Min nTPM: 50.9
Sample A Male 53.1
Sample B Male 52.2
Sample C Female 52.2
Sample D Female 50.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.7
67881782 Antisense, RP_040920_02_H11, Mouse strain C57BL/6J (56 days, male) 4.7
Pallidum
Expression energy: 2.9
67881782 Antisense, RP_040920_02_H11, Mouse strain C57BL/6J (56 days, male) 2.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.