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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.3 nTPM
HPA:10.3 nTPM
GTEx:8.6 nTPM
FANTOM5:26.0 Scaled Tags Per Million
Pig:5.6 nTPM
Mouse:5.1 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 10.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 7.7
2289 Male, age 61, right hemisphere 9.6
2288 Male, age 75, left hemisphere 9.2
1854 Male, age 80, left hemisphere 9.0
2290 Female, age 72, unknown 7.3
1857 Female, age 85, left hemisphere 7.1
2846 Female, age 79, unknown 7.1
1781 Male, age 74, unknown 6.9
2481 Female, age 94, left hemisphere 5.3
Claustrum
nTPM: 9.1
2568 Male, age 61, both hemispheres 11.5
2292 Female, age 85, both hemispheres 11.1
2284 Female, age 91, both hemispheres 9.9
2392 Female, age 94, both hemispheres 9.2
2645 Female, age 72, unknown 9.0
2198 Male, age 80, both hemispheres 8.0
2196 Female, age 79, unknown 7.8
1956 Male, age 74, unknown 7.5
2491 Male, age 75, both hemispheres 7.4
Globus pallidus, externus
nTPM: 10.3
2567 Female, age 72, unknown 13.5
2646 Male, age 61, right hemisphere 11.7
1996 Male, age 80, right hemisphere 9.3
2772 Female, age 79, unknown 8.7
2395 Male, age 75, both hemispheres 8.3
Globus pallidus, internus
nTPM: 10.1
2566 Female, age 72, unknown 12.9
2111 Female, age 85, right hemisphere 11.8
1818 Male, age 74, unknown 10.9
2778 Female, age 91, both hemispheres 10.6
2037 Male, age 80, right hemisphere 10.4
2483 Female, age 94, right hemisphere 7.2
2287 Male, age 75, right hemisphere 6.9
Nucleus accumbens
nTPM: 7.8
2391 Female, age 94, left hemisphere 9.0
2824 Male, age 61, right hemisphere 8.8
2732 Male, age 80, right hemisphere 8.6
2698 Female, age 72, unknown 7.8
1783 Male, age 74, unknown 7.1
1806 Female, age 85, left hemisphere 7.1
2286 Male, age 75, left hemisphere 7.0
1856 Female, age 91, right hemisphere 6.7
Nucleus basalis of Meynert
nTPM: 9.3
2569 Male, age 61, both hemispheres 12.4
2393 Male, age 80, right hemisphere 8.9
2484 Female, age 94, left hemisphere 8.5
2821 Male, age 75, both hemispheres 7.3
Nucleus of the diagonal band
nTPM: 6.2
2195 Female, age 85, both hemispheres 7.1
1979 Male, age 74, unknown 6.7
2029 Male, age 61, right hemisphere 6.7
2775 Male, age 80, right hemisphere 5.5
1812 Female, age 91, both hemispheres 4.7
Olfactory tubercle
nTPM: 7.4
1998 Female, age 91, both hemispheres 9.1
2487 Female, age 94, left hemisphere 7.9
2856 Male, age 75, right hemisphere 6.4
1846 Male, age 80, right hemisphere 6.1
Putamen
nTPM: 8.6
2489 Female, age 72, unknown 9.7
2647 Male, age 75, left hemisphere 9.6
1838 Male, age 80, right hemisphere 9.5
1829 Male, age 74, unknown 8.6
2466 Female, age 79, unknown 8.5
1937 Female, age 91, right hemisphere 7.5
2482 Female, age 94, left hemisphere 6.8
Septal nuclei
nTPM: 7.0
2394 Male, age 61, left hemisphere 8.9
2059 Female, age 85, both hemispheres 8.4
2199 Male, age 80, right hemisphere 8.3
2009 Female, age 91, both hemispheres 6.5
2629 Female, age 94, right hemisphere 6.0
2031 Female, age 72, unknown 5.3
1960 Male, age 74, unknown 5.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 8.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 7.9
Samples: 246

Max nTPM: 12.6
Min nTPM: 4.5
Std nTPM: 1.5
Median nTPM: 7.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 12.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 12.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 12.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 11.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 11.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 11.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 11.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 11.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 11.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 10.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 10.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 8.6
Samples: 246

Max nTPM: 15.1
Min nTPM: 3.8
Std nTPM: 1.9
Median nTPM: 8.6
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 15.1
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 14.6
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 13.8
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 13.3
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 13.2
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 12.8
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 12.8
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 12.6
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 12.2
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 12.1
GTEX-147GR-0011-R6b-SM-5S2RO 60-69 years, male 11.9
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Brain - Putamen (basal ganglia)
Average nTPM: 8.0
Samples: 205

Max nTPM: 13.5
Min nTPM: 3.9
Std nTPM: 1.6
Median nTPM: 8.0
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 13.5
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 13.1
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 11.7
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 11.6
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 11.1
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 11.1
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 10.8
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 10.7
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 10.6
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 10.5
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 10.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 25.9
FF:10164-103B2 76 years, female 25.9
Globus pallidus
Scaled Tags Per Million: 20.5
FF:10161-103A8 76 years, female 21.3
FF:10175-103C4 60 years, female 19.7
Nucleus accumbens
Scaled Tags Per Million: 26.0
FF:10037-101F1 23-56 years, mixed 26.0
Putamen
Scaled Tags Per Million: 21.9
FF:10176-103C5 60 years, female 21.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.6
Pig sample Sample description nTPM
Caudate
nTPM: 5.1
Samples: 4

Max nTPM: 5.4
Min nTPM: 4.5
Sample A Female 4.5
Sample B Female 5.3
Sample C Male 5.4
Sample D Male 5.2
Putamen
nTPM: 5.5
Samples: 4

Max nTPM: 6.2
Min nTPM: 4.5
Sample A Female 6.2
Sample B Female 4.5
Sample C Male 5.3
Sample D Male 6.1
Septum
nTPM: 4.7
Samples: 4

Max nTPM: 4.9
Min nTPM: 4.3
Sample A Female 4.9
Sample B Female 4.3
Sample C Male 4.7
Sample D Male 4.8
Ventral pallidum
nTPM: 5.6
Samples: 4

Max nTPM: 6.8
Min nTPM: 4.7
Sample A Female 4.7
Sample B Female 4.7
Sample C Male 6.8
Sample D Male 6.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 5.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 5.1
Samples: 4

Max nTPM: 5.3
Min nTPM: 4.9
Sample A Male 5.3
Sample B Male 5.0
Sample C Female 4.9
Sample D Female 5.0
Septum
nTPM: 4.2
Samples: 4

Max nTPM: 4.6
Min nTPM: 4.0
Sample A Male 4.6
Sample B Male 4.2
Sample C Female 4.1
Sample D Female 4.0
Ventral forebrain
nTPM: 5.1
Samples: 4

Max nTPM: 5.7
Min nTPM: 4.3
Sample A Male 5.7
Sample B Male 4.7
Sample C Female 4.3
Sample D Female 5.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
75079799 Antisense, RP_060412_02_F10, Mouse strain C57BL/6J (56 days, male) 0.1
69838744 Antisense, RP_050321_03_G07, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
75079799 Antisense, RP_060412_02_F10, Mouse strain C57BL/6J (56 days, male) 0.1
69838744 Antisense, RP_050321_03_G07, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.