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HDAC5
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:40.4 nTPM
HPA:40.4 nTPM
GTEx:47.2 nTPM
FANTOM5:74.7 Scaled Tags Per Million
Pig:44.2 nTPM
Mouse:41.2 nTPM
Allen mouse:3.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA030991Antibody CAB019400
Glial cells Not detectedLow
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 40.4
Sample id Sample description nTPM
Hippocampus
nTPM: 27.2
2529 Female, age 94, left hemisphere 42.6
2621 Female, age 67, right hemisphere 39.0
2148 Female, age 91, left hemisphere 25.8
1911 Female, age 85, right hemisphere 24.9
1898 Male, age 80, left hemisphere 19.2
1855 Male, age 76, left hemisphere 11.5
Dentate gyrus
nTPM: 24.7
2531 Female, age 67, both hemispheres 33.5
1927 Female, age 91, both hemispheres 24.9
2530 Female, age 94, left hemisphere 24.1
2528 Male, age 74, both hemispheres 22.6
2246 Female, age 85, both hemispheres 21.8
2010 Male, age 76, both hemispheres 21.5
Entorhinal gyrus
nTPM: 40.4
2613 Female, age 94, left hemisphere 63.5
2686 Male, age 75, right hemisphere 43.0
2764 Male, age 80, right hemisphere 42.6
1787 Male, age 76, left hemisphere 32.5
1938 Female, age 85, left hemisphere 32.1
2117 Female, age 91, right hemisphere 28.6
Hippocampus, CA1
nTPM: 20.0
2527 Male, age 74, both hemispheres 24.1
2045 Male, age 76, both hemispheres 21.9
1873 Female, age 85, both hemispheres 18.3
2082 Female, age 91, right hemisphere 18.1
2749 Male, age 80, left hemisphere 17.4
Hippocampus, CA2
nTPM: 25.1
1963 Male, age 80, left hemisphere 37.1
2437 Female, age 94, left hemisphere 37.0
2113 Female, age 91, right hemisphere 21.8
1940 Female, age 85, left hemisphere 21.5
1892 Male, age 76, both hemispheres 19.3
2249 Male, age 74, both hemispheres 13.9
Hippocampus, CA3
nTPM: 25.5
2620 Female, age 94, left hemisphere 34.8
2861 Female, age 67, both hemispheres 34.7
1891 Female, age 85, both hemispheres 27.0
1867 Male, age 76, both hemispheres 22.0
2137 Male, age 80, left hemisphere 21.6
2436 Male, age 74, both hemispheres 12.8
Parahippocampal cortex
nTPM: 35.5
2622 Female, age 67, right hemisphere 53.5
2692 Male, age 74, both hemispheres 45.3
1990 Female, age 91, right hemisphere 37.7
2532 Female, age 72, left hemisphere 37.5
2245 Female, age 91, both hemispheres 36.5
2693 Female, age 94, both hemispheres 30.9
2250 Female, age 67, right hemisphere 30.8
1933 Female, age 85, both hemispheres 30.6
2018 Male, age 76, both hemispheres 26.8
1850 Male, age 80, both hemispheres 25.6
Perirhinal gyrus
nTPM: 28.9
1847 Female, age 91, left hemisphere 31.6
1794 Male, age 80, right hemisphere 30.2
2521 Female, age 94, right hemisphere 28.8
2848 Male, age 76, right hemisphere 27.1
1841 Female, age 85, right hemisphere 26.8
Subiculum
nTPM: 31.3
2619 Male, age 74, both hemispheres 51.7
1977 Female, age 85, both hemispheres 33.0
2042 Male, age 76, both hemispheres 31.0
2438 Female, age 94, left hemisphere 27.6
1901 Male, age 80, both hemispheres 25.2
2729 Female, age 91, right hemisphere 19.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 47.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 47.2
Samples: 197

Max nTPM: 117.8
Min nTPM: 14.6
Std nTPM: 17.0
Median nTPM: 42.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 117.8
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 108.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 102.4
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 96.0
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 87.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 84.2
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 81.4
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 78.5
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 78.3
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 78.1
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 78.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 74.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 74.7
FF:10153-102I9 76 years, female 106.5
FF:10169-103B7 60 years, female 42.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 44.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 33.4
Samples: 4

Max nTPM: 40.1
Min nTPM: 24.0
Sample A Female 40.1
Sample B Female 30.0
Sample C Male 39.3
Sample D Male 24.0
Entorhinal cortex
nTPM: 44.2
Samples: 4

Max nTPM: 50.9
Min nTPM: 40.4
Sample A Female 42.5
Sample B Female 40.4
Sample C Male 50.9
Sample D Male 43.0
Subiculum
nTPM: 42.2
Samples: 4

Max nTPM: 57.1
Min nTPM: 36.0
Sample A Female 57.1
Sample B Female 38.5
Sample C Male 37.2
Sample D Male 36.0
Ventral hippocampus
nTPM: 35.1
Samples: 4

Max nTPM: 46.5
Min nTPM: 26.2
Sample A Female 27.9
Sample B Female 26.2
Sample C Male 46.5
Sample D Male 39.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 41.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 41.2
Samples: 4

Max nTPM: 41.9
Min nTPM: 40.4
Sample A Male 40.4
Sample B Male 41.9
Sample C Female 41.9
Sample D Female 40.7
Hippocampal formation
nTPM: 39.8
Samples: 4

Max nTPM: 43.3
Min nTPM: 35.7
Sample A Male 43.3
Sample B Male 37.5
Sample C Female 35.7
Sample D Female 42.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.0
69734965 Antisense, RP_050503_01_G09, Mouse strain C57BL/6J (56 days, male) 3.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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