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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:246.8 nTPM
HPA:246.8 nTPM
GTEx:542.5 nTPM
FANTOM5:677.9 Scaled Tags Per Million
Mouse:566.6 nTPM
Allen mouse:7.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 246.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 229.8
1870 Female, age 42, unknown 242.5
2666 Male, age 74, left hemisphere 239.5
1827 Male, age 72, unknown 239.0
2411 Female, age 72, unknown 235.9
1833 Male, age 53, unknown 235.2
2828 Female, age 72, unknown 233.9
1830 Male, age 51, unknown 231.1
2019 Male, age 18, unknown 229.8
2219 Male, age 76, both hemispheres 215.6
2586 Male, age 75, left hemisphere 195.5
Dorsal raphe nucleus
nTPM: 241.4
2298 Female, age 72, unknown 267.6
2750 Male, age 76, both hemispheres 240.5
1828 Male, age 53, unknown 238.1
2016 Female, age 72, unknown 234.3
2047 Male, age 72, unknown 226.6
Inferior colliculus
nTPM: 235.7
2097 Female, age 72, unknown 246.4
2849 Male, age 72, unknown 236.4
1848 Female, age 42, unknown 232.1
1890 Male, age 53, unknown 227.8
Median raphe nucleus
nTPM: 235.7
2220 Male, age 76, midline 235.7
Pedunculopontine tegmental nucleus
nTPM: 246.8
2334 Male, age 80, both hemispheres 251.6
2338 Male, age 61, both hemispheres 249.2
1921 Female, age 85, both hemispheres 239.5
Periaquaductal grey, anterior
nTPM: 227.7
1795 Male, age 51, unknown 232.8
1947 Male, age 18, unknown 225.7
2502 Female, age 75, unknown 224.5
Periaquaductal grey, dorsal
nTPM: 236.0
2850 Male, age 76, both hemispheres 258.3
1840 Male, age 53, unknown 233.6
1831 Male, age 72, unknown 232.0
2464 Female, age 72, unknown 220.3
Periaquaductal grey, lateral
nTPM: 226.2
2053 Male, age 18, unknown 227.1
2272 Male, age 74, both hemispheres 226.1
2140 Male, age 76, both hemispheres 225.4
Pretectal area
nTPM: 245.0
1817 Female, age 42, unknown 264.3
1815 Male, age 53, unknown 259.8
2224 Female, age 72, unknown 256.7
1944 Female, age 72, unknown 254.6
1816 Male, age 51, unknown 254.4
2273 Male, age 74, both hemispheres 250.0
2007 Male, age 72, unknown 245.9
2825 Male, age 18, unknown 239.9
2667 Female, age 75, unknown 224.9
2407 Male, age 75, both hemispheres 222.4
2316 Male, age 76, right hemisphere 221.9
Red nucleus
nTPM: 241.4
2725 Female, age 75, unknown 268.0
1821 Female, age 72, unknown 265.3
2503 Female, age 72, unknown 261.2
2823 Male, age 76, right hemisphere 244.0
1904 Male, age 53, unknown 237.5
1954 Female, age 42, unknown 236.0
2588 Male, age 74, left hemisphere 235.6
2227 Male, age 72, unknown 235.4
2785 Male, age 18, unknown 235.1
1865 Male, age 51, unknown 232.8
2769 Male, age 72, unknown 230.5
2584 Male, age 75, left hemisphere 215.6
Substantia nigra
nTPM: 240.6
2241 Male, age 72, unknown 258.3
1889 Female, age 72, unknown 252.1
2699 Male, age 18, unknown 248.7
1916 Female, age 42, unknown 247.9
1851 Male, age 51, unknown 242.2
1941 Male, age 53, unknown 241.6
2590 Female, age 75, unknown 237.1
2665 Male, age 74, both hemispheres 236.6
2409 Female, age 72, unknown 223.6
2583 Male, age 75, right hemisphere 217.4
Superior colliculus
nTPM: 236.8
2587 Male, age 74, left hemisphere 255.9
1995 Male, age 72, unknown 240.3
1913 Female, age 42, unknown 239.5
2087 Female, age 72, unknown 238.7
2668 Female, age 75, unknown 238.4
2261 Male, age 18, unknown 237.9
1796 Male, age 53, unknown 236.7
1839 Male, age 51, unknown 231.1
1895 Male, age 76, right hemisphere 228.4
2664 Male, age 75, both hemispheres 221.3
Ventral tegmental area
nTPM: 240.0
2223 Female, age 72, unknown 253.8
2218 Male, age 76, both hemispheres 247.9
1915 Female, age 42, unknown 242.4
1942 Male, age 51, unknown 233.8
2021 Male, age 53, unknown 232.8
2410 Female, age 72, unknown 229.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 542.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 542.5
Samples: 139

Max nTPM: 935.0
Min nTPM: 359.2
Std nTPM: 117.5
Median nTPM: 529.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 935.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 926.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 887.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 819.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 810.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 783.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 771.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 752.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 745.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 741.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 731.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 677.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 677.9
FF:10158-103A5 76 years, female 677.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 566.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 566.6
Samples: 4

Max nTPM: 573.5
Min nTPM: 555.6
Sample A Male 573.5
Sample B Male 571.8
Sample C Female 565.5
Sample D Female 555.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.4
2739 Antisense, RP_Baylor_103126, Mouse strain C57BL/6J (56 days, male) 7.4
2740 Antisense, RP_Baylor_103126, Mouse strain C57BL/6J (56 days, male) 4.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.