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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:24.0 nTPM
HPA:24.0 nTPM
GTEx:21.5 nTPM
FANTOM5:108.6 Scaled Tags Per Million
Pig:23.8 nTPM
Mouse:52.6 nTPM
Allen mouse:11.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA036382Antibody CAB012416
Glial cells MediumNot detected
Neuronal cells HighMedium




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 24.0
Sample id Sample description nTPM
Hippocampus
nTPM: 23.1
2529 Female, age 94, left hemisphere 25.1
2621 Female, age 67, right hemisphere 24.3
2148 Female, age 91, left hemisphere 24.1
1898 Male, age 80, left hemisphere 23.0
1855 Male, age 76, left hemisphere 21.8
1911 Female, age 85, right hemisphere 20.4
Dentate gyrus
nTPM: 23.4
2531 Female, age 67, both hemispheres 27.0
2530 Female, age 94, left hemisphere 23.6
2246 Female, age 85, both hemispheres 23.2
1927 Female, age 91, both hemispheres 22.6
2010 Male, age 76, both hemispheres 22.3
2528 Male, age 74, both hemispheres 21.5
Entorhinal gyrus
nTPM: 24.0
2686 Male, age 75, right hemisphere 26.8
2764 Male, age 80, right hemisphere 25.4
2613 Female, age 94, left hemisphere 23.5
2117 Female, age 91, right hemisphere 23.4
1938 Female, age 85, left hemisphere 22.6
1787 Male, age 76, left hemisphere 22.1
Hippocampus, CA1
nTPM: 23.4
2749 Male, age 80, left hemisphere 25.6
2045 Male, age 76, both hemispheres 25.1
2527 Male, age 74, both hemispheres 23.6
1873 Female, age 85, both hemispheres 23.2
2082 Female, age 91, right hemisphere 19.2
Hippocampus, CA2
nTPM: 21.2
1963 Male, age 80, left hemisphere 23.6
2437 Female, age 94, left hemisphere 22.7
1892 Male, age 76, both hemispheres 22.1
2113 Female, age 91, right hemisphere 20.6
1940 Female, age 85, left hemisphere 20.1
2249 Male, age 74, both hemispheres 18.3
Hippocampus, CA3
nTPM: 23.5
2620 Female, age 94, left hemisphere 26.6
2861 Female, age 67, both hemispheres 25.1
2137 Male, age 80, left hemisphere 23.7
1891 Female, age 85, both hemispheres 22.8
1867 Male, age 76, both hemispheres 22.3
2436 Male, age 74, both hemispheres 20.8
Parahippocampal cortex
nTPM: 23.3
2692 Male, age 74, both hemispheres 28.9
1850 Male, age 80, both hemispheres 26.0
2532 Female, age 72, left hemisphere 24.8
2622 Female, age 67, right hemisphere 24.7
2245 Female, age 91, both hemispheres 24.2
1990 Female, age 91, right hemisphere 21.3
2693 Female, age 94, both hemispheres 21.3
1933 Female, age 85, both hemispheres 21.1
2018 Male, age 76, both hemispheres 21.1
2250 Female, age 67, right hemisphere 19.3
Perirhinal gyrus
nTPM: 23.3
1794 Male, age 80, right hemisphere 26.9
1841 Female, age 85, right hemisphere 23.6
1847 Female, age 91, left hemisphere 22.7
2848 Male, age 76, right hemisphere 22.3
2521 Female, age 94, right hemisphere 21.0
Subiculum
nTPM: 22.3
2619 Male, age 74, both hemispheres 25.8
2438 Female, age 94, left hemisphere 24.2
1901 Male, age 80, both hemispheres 22.4
2042 Male, age 76, both hemispheres 21.2
1977 Female, age 85, both hemispheres 20.5
2729 Female, age 91, right hemisphere 20.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 21.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 21.5
Samples: 197

Max nTPM: 34.9
Min nTPM: 11.7
Std nTPM: 3.5
Median nTPM: 21.3
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 34.9
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 30.2
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 30.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 29.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 29.4
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 28.9
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 28.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 28.2
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 28.1
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 27.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 27.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 108.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 108.6
FF:10169-103B7 60 years, female 117.1
FF:10153-102I9 76 years, female 100.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 23.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 23.8
Samples: 4

Max nTPM: 28.1
Min nTPM: 21.1
Sample A Female 28.1
Sample B Female 24.6
Sample C Male 21.5
Sample D Male 21.1
Entorhinal cortex
nTPM: 19.1
Samples: 4

Max nTPM: 22.2
Min nTPM: 17.1
Sample A Female 22.2
Sample B Female 18.1
Sample C Male 19.1
Sample D Male 17.1
Subiculum
nTPM: 21.1
Samples: 4

Max nTPM: 25.7
Min nTPM: 18.7
Sample A Female 25.7
Sample B Female 19.4
Sample C Male 20.4
Sample D Male 18.7
Ventral hippocampus
nTPM: 22.9
Samples: 4

Max nTPM: 26.9
Min nTPM: 16.9
Sample A Female 22.0
Sample B Female 16.9
Sample C Male 26.9
Sample D Male 25.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 52.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 44.6
Samples: 4

Max nTPM: 55.5
Min nTPM: 38.3
Sample A Male 41.6
Sample B Male 38.3
Sample C Female 43.0
Sample D Female 55.5
Hippocampal formation
nTPM: 52.6
Samples: 4

Max nTPM: 62.1
Min nTPM: 41.7
Sample A Male 41.7
Sample B Male 60.2
Sample C Female 62.1
Sample D Female 46.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 11.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.0
81600156 Antisense, RP_080324_01_D04, Mouse strain C57BL/6J (56 days, male) 11.2
69887469 Antisense, RP_050512_03_G05, Mouse strain C57BL/6J (56 days, male) 10.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.