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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.6 nTPM
HPA:8.6 nTPM
GTEx:14.7 nTPM
FANTOM5:21.6 Scaled Tags Per Million
Pig:12.2 nTPM
Mouse:28.2 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 8.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.9
2219 Male, age 76, both hemispheres 12.2
2586 Male, age 75, left hemisphere 10.7
2666 Male, age 74, left hemisphere 9.5
1827 Male, age 72, unknown 8.7
2411 Female, age 72, unknown 6.1
1830 Male, age 51, unknown 5.5
2828 Female, age 72, unknown 5.2
1833 Male, age 53, unknown 4.0
1870 Female, age 42, unknown 3.8
2019 Male, age 18, unknown 3.7
Dorsal raphe nucleus
nTPM: 3.6
2047 Male, age 72, unknown 4.9
2016 Female, age 72, unknown 4.7
2750 Male, age 76, both hemispheres 4.5
1828 Male, age 53, unknown 3.4
2298 Female, age 72, unknown 0.8
Inferior colliculus
nTPM: 8.6
1890 Male, age 53, unknown 10.1
2849 Male, age 72, unknown 9.3
1848 Female, age 42, unknown 8.1
2097 Female, age 72, unknown 7.1
Median raphe nucleus
nTPM: 6.9
2220 Male, age 76, midline 6.9
Pedunculopontine tegmental nucleus
nTPM: 7.0
2334 Male, age 80, both hemispheres 8.1
1921 Female, age 85, both hemispheres 7.4
2338 Male, age 61, both hemispheres 5.6
Periaquaductal grey, anterior
nTPM: 7.7
1947 Male, age 18, unknown 12.3
2502 Female, age 75, unknown 6.7
1795 Male, age 51, unknown 4.2
Periaquaductal grey, dorsal
nTPM: 6.4
1840 Male, age 53, unknown 9.4
1831 Male, age 72, unknown 7.5
2464 Female, age 72, unknown 5.0
2850 Male, age 76, both hemispheres 3.5
Periaquaductal grey, lateral
nTPM: 3.3
2053 Male, age 18, unknown 4.7
2140 Male, age 76, both hemispheres 4.3
2272 Male, age 74, both hemispheres 0.9
Pretectal area
nTPM: 5.8
1944 Female, age 72, unknown 7.9
2007 Male, age 72, unknown 7.6
1816 Male, age 51, unknown 7.3
2224 Female, age 72, unknown 7.3
2825 Male, age 18, unknown 6.5
1815 Male, age 53, unknown 6.4
2316 Male, age 76, right hemisphere 5.8
2407 Male, age 75, both hemispheres 5.5
2667 Female, age 75, unknown 4.5
1817 Female, age 42, unknown 3.9
2273 Male, age 74, both hemispheres 1.3
Red nucleus
nTPM: 4.7
2584 Male, age 75, left hemisphere 11.9
2588 Male, age 74, left hemisphere 10.9
2503 Female, age 72, unknown 5.9
1904 Male, age 53, unknown 3.9
2725 Female, age 75, unknown 3.8
1954 Female, age 42, unknown 3.6
1821 Female, age 72, unknown 3.3
2227 Male, age 72, unknown 3.2
2823 Male, age 76, right hemisphere 3.2
2769 Male, age 72, unknown 2.5
1865 Male, age 51, unknown 2.3
2785 Male, age 18, unknown 2.0
Substantia nigra
nTPM: 8.0
2241 Male, age 72, unknown 11.4
1916 Female, age 42, unknown 10.8
2665 Male, age 74, both hemispheres 10.1
1851 Male, age 51, unknown 9.7
1941 Male, age 53, unknown 8.8
2583 Male, age 75, right hemisphere 7.2
2699 Male, age 18, unknown 6.9
1889 Female, age 72, unknown 6.8
2590 Female, age 75, unknown 6.5
2409 Female, age 72, unknown 1.5
Superior colliculus
nTPM: 6.3
1895 Male, age 76, right hemisphere 11.0
2668 Female, age 75, unknown 10.7
2587 Male, age 74, left hemisphere 8.8
1839 Male, age 51, unknown 7.6
2261 Male, age 18, unknown 6.5
1796 Male, age 53, unknown 5.3
2664 Male, age 75, both hemispheres 4.9
2087 Female, age 72, unknown 4.7
1913 Female, age 42, unknown 3.2
1995 Male, age 72, unknown 0.4
Ventral tegmental area
nTPM: 6.5
1942 Male, age 51, unknown 9.2
1915 Female, age 42, unknown 7.9
2218 Male, age 76, both hemispheres 7.2
2021 Male, age 53, unknown 5.3
2410 Female, age 72, unknown 4.9
2223 Female, age 72, unknown 4.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.7
Samples: 139

Max nTPM: 26.6
Min nTPM: 9.3
Std nTPM: 2.7
Median nTPM: 14.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 26.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 22.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 20.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 20.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 20.5
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 20.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 20.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 20.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 19.8
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 19.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 19.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.6
FF:10158-103A5 76 years, female 21.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.2
Pig sample Sample description nTPM
Midbrain
nTPM: 12.2
Samples: 4

Max nTPM: 14.7
Min nTPM: 7.6
Sample A Female 7.6
Sample B Female 13.2
Sample C Male 13.4
Sample D Male 14.7
Periaqueductal gray
nTPM: 11.1
Samples: 3

Max nTPM: 12.6
Min nTPM: 8.8
Sample B Female 12.0
Sample C Male 12.6
Sample D Male 8.8
Substantia nigra
nTPM: 10.8
Samples: 4

Max nTPM: 13.7
Min nTPM: 6.9
Sample A Female 13.7
Sample B Female 8.9
Sample C Male 13.7
Sample D Male 6.9
Superior colliculi
nTPM: 11.4
Samples: 4

Max nTPM: 12.7
Min nTPM: 9.6
Sample A Female 12.7
Sample B Female 9.6
Sample C Male 11.0
Sample D Male 12.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.2
Samples: 4

Max nTPM: 32.9
Min nTPM: 25.9
Sample A Male 27.4
Sample B Male 25.9
Sample C Female 32.9
Sample D Female 26.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
69290728 Antisense, RP_050407_04_F02, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.