ABOUTMENU
HELP
NEWS
DNAJC4
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.7 nTPM
HPA:48.7 nTPM
GTEx:50.1 nTPM
FANTOM5:31.7 Scaled Tags Per Million
Mouse:17.4 nTPM
Allen mouse:3.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.3
2586 Male, age 75, left hemisphere 51.3
2666 Male, age 74, left hemisphere 49.6
2019 Male, age 18, unknown 48.5
2828 Female, age 72, unknown 47.9
1827 Male, age 72, unknown 47.2
1833 Male, age 53, unknown 45.0
1830 Male, age 51, unknown 44.5
2219 Male, age 76, both hemispheres 44.0
1870 Female, age 42, unknown 43.7
2411 Female, age 72, unknown 41.1
Dorsal raphe nucleus
nTPM: 43.1
1828 Male, age 53, unknown 44.3
2016 Female, age 72, unknown 44.2
2750 Male, age 76, both hemispheres 42.6
2047 Male, age 72, unknown 42.4
2298 Female, age 72, unknown 42.2
Inferior colliculus
nTPM: 46.0
1890 Male, age 53, unknown 47.0
2849 Male, age 72, unknown 46.3
1848 Female, age 42, unknown 45.4
2097 Female, age 72, unknown 45.4
Median raphe nucleus
nTPM: 41.5
2220 Male, age 76, midline 41.5
Pedunculopontine tegmental nucleus
nTPM: 44.1
2338 Male, age 61, both hemispheres 46.5
2334 Male, age 80, both hemispheres 43.6
1921 Female, age 85, both hemispheres 42.2
Periaquaductal grey, anterior
nTPM: 46.3
1795 Male, age 51, unknown 47.9
1947 Male, age 18, unknown 46.3
2502 Female, age 75, unknown 44.7
Periaquaductal grey, dorsal
nTPM: 44.8
1831 Male, age 72, unknown 47.4
2850 Male, age 76, both hemispheres 45.7
1840 Male, age 53, unknown 43.7
2464 Female, age 72, unknown 42.6
Periaquaductal grey, lateral
nTPM: 44.1
2272 Male, age 74, both hemispheres 47.9
2053 Male, age 18, unknown 42.2
2140 Male, age 76, both hemispheres 42.1
Pretectal area
nTPM: 48.7
1817 Female, age 42, unknown 56.7
2007 Male, age 72, unknown 55.7
1816 Male, age 51, unknown 53.7
1815 Male, age 53, unknown 52.2
1944 Female, age 72, unknown 50.3
2667 Female, age 75, unknown 48.9
2407 Male, age 75, both hemispheres 45.2
2273 Male, age 74, both hemispheres 45.0
2825 Male, age 18, unknown 44.1
2316 Male, age 76, right hemisphere 42.0
2224 Female, age 72, unknown 41.9
Red nucleus
nTPM: 47.2
2785 Male, age 18, unknown 50.4
2588 Male, age 74, left hemisphere 48.8
2584 Male, age 75, left hemisphere 48.3
2823 Male, age 76, right hemisphere 47.6
2769 Male, age 72, unknown 47.4
2503 Female, age 72, unknown 47.1
1821 Female, age 72, unknown 46.9
1865 Male, age 51, unknown 46.7
1904 Male, age 53, unknown 46.3
2227 Male, age 72, unknown 46.1
1954 Female, age 42, unknown 45.6
2725 Female, age 75, unknown 45.6
Substantia nigra
nTPM: 46.3
2665 Male, age 74, both hemispheres 52.4
1889 Female, age 72, unknown 48.9
2583 Male, age 75, right hemisphere 48.1
1916 Female, age 42, unknown 47.2
2590 Female, age 75, unknown 46.6
2699 Male, age 18, unknown 46.5
1941 Male, age 53, unknown 46.4
1851 Male, age 51, unknown 45.3
2409 Female, age 72, unknown 42.0
2241 Male, age 72, unknown 39.5
Superior colliculus
nTPM: 47.3
2664 Male, age 75, both hemispheres 52.1
2087 Female, age 72, unknown 49.5
2668 Female, age 75, unknown 49.2
2261 Male, age 18, unknown 47.4
1995 Male, age 72, unknown 47.2
1796 Male, age 53, unknown 46.0
2587 Male, age 74, left hemisphere 45.8
1913 Female, age 42, unknown 45.6
1839 Male, age 51, unknown 45.4
1895 Male, age 76, right hemisphere 45.0
Ventral tegmental area
nTPM: 43.9
2410 Female, age 72, unknown 46.3
1915 Female, age 42, unknown 44.6
2218 Male, age 76, both hemispheres 44.4
2223 Female, age 72, unknown 43.3
1942 Male, age 51, unknown 42.6
2021 Male, age 53, unknown 42.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.1
Samples: 139

Max nTPM: 104.2
Min nTPM: 26.5
Std nTPM: 11.8
Median nTPM: 49.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 104.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 83.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 82.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 79.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 75.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 73.8
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 70.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 70.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 70.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 68.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 67.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.7
FF:10158-103A5 76 years, female 31.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.4
Samples: 4

Max nTPM: 19.9
Min nTPM: 14.2
Sample A Male 19.8
Sample B Male 15.8
Sample C Female 14.2
Sample D Female 19.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
69262343 Antisense, RP_050303_02_C01, Mouse strain C57BL/6J (56 days, male) 3.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.