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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:30.5 nTPM
HPA:30.5 nTPM
GTEx:33.3 nTPM
FANTOM5:44.4 Scaled Tags Per Million
Pig:19.5 nTPM
Mouse:9.6 nTPM
Allen mouse:5.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA026846Antibody CAB016135
Glial cells LowLow
Neuronal cells Not detectedMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 30.5
Sample id Sample description nTPM
Hippocampus
nTPM: 23.9
1855 Male, age 76, left hemisphere 37.1
2621 Female, age 67, right hemisphere 34.5
1898 Male, age 80, left hemisphere 23.8
1911 Female, age 85, right hemisphere 20.6
2148 Female, age 91, left hemisphere 14.9
2529 Female, age 94, left hemisphere 12.8
Dentate gyrus
nTPM: 24.1
2010 Male, age 76, both hemispheres 48.6
2530 Female, age 94, left hemisphere 43.5
1927 Female, age 91, both hemispheres 16.9
2528 Male, age 74, both hemispheres 12.8
2246 Female, age 85, both hemispheres 11.5
2531 Female, age 67, both hemispheres 11.2
Entorhinal gyrus
nTPM: 23.6
2613 Female, age 94, left hemisphere 29.7
1787 Male, age 76, left hemisphere 29.1
2764 Male, age 80, right hemisphere 25.6
2117 Female, age 91, right hemisphere 21.0
1938 Female, age 85, left hemisphere 20.2
2686 Male, age 75, right hemisphere 15.9
Hippocampus, CA1
nTPM: 30.5
2749 Male, age 80, left hemisphere 70.3
2527 Male, age 74, both hemispheres 30.5
1873 Female, age 85, both hemispheres 28.0
2045 Male, age 76, both hemispheres 13.2
2082 Female, age 91, right hemisphere 10.4
Hippocampus, CA2
nTPM: 24.8
1963 Male, age 80, left hemisphere 49.7
1892 Male, age 76, both hemispheres 31.2
2249 Male, age 74, both hemispheres 25.6
2437 Female, age 94, left hemisphere 19.6
2113 Female, age 91, right hemisphere 13.1
1940 Female, age 85, left hemisphere 9.8
Hippocampus, CA3
nTPM: 19.1
2137 Male, age 80, left hemisphere 35.8
1867 Male, age 76, both hemispheres 24.4
2861 Female, age 67, both hemispheres 20.6
2436 Male, age 74, both hemispheres 12.8
1891 Female, age 85, both hemispheres 12.7
2620 Female, age 94, left hemisphere 8.2
Parahippocampal cortex
nTPM: 20.6
2532 Female, age 72, left hemisphere 24.4
2693 Female, age 94, both hemispheres 23.5
2245 Female, age 91, both hemispheres 23.1
1933 Female, age 85, both hemispheres 21.8
2018 Male, age 76, both hemispheres 21.8
2692 Male, age 74, both hemispheres 21.3
2622 Female, age 67, right hemisphere 20.1
1850 Male, age 80, both hemispheres 19.0
1990 Female, age 91, right hemisphere 16.6
2250 Female, age 67, right hemisphere 14.2
Perirhinal gyrus
nTPM: 20.2
2521 Female, age 94, right hemisphere 23.3
1794 Male, age 80, right hemisphere 20.4
2848 Male, age 76, right hemisphere 20.3
1841 Female, age 85, right hemisphere 18.7
1847 Female, age 91, left hemisphere 18.4
Subiculum
nTPM: 18.9
2042 Male, age 76, both hemispheres 30.5
1901 Male, age 80, both hemispheres 27.5
1977 Female, age 85, both hemispheres 17.0
2619 Male, age 74, both hemispheres 15.5
2438 Female, age 94, left hemisphere 11.9
2729 Female, age 91, right hemisphere 10.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 33.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 33.3
Samples: 197

Max nTPM: 92.8
Min nTPM: 7.4
Std nTPM: 17.8
Median nTPM: 28.0
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 92.8
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 89.1
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 86.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 85.1
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 83.4
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 81.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 78.0
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 76.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 71.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 71.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 70.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 44.4
FF:10169-103B7 60 years, female 44.9
FF:10153-102I9 76 years, female 43.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 19.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 12.7
Samples: 4

Max nTPM: 15.3
Min nTPM: 9.3
Sample A Female 14.9
Sample B Female 15.3
Sample C Male 11.4
Sample D Male 9.3
Entorhinal cortex
nTPM: 19.5
Samples: 4

Max nTPM: 21.0
Min nTPM: 18.4
Sample A Female 21.0
Sample B Female 18.4
Sample C Male 19.3
Sample D Male 19.4
Subiculum
nTPM: 18.5
Samples: 4

Max nTPM: 26.2
Min nTPM: 13.7
Sample A Female 26.2
Sample B Female 18.3
Sample C Male 15.7
Sample D Male 13.7
Ventral hippocampus
nTPM: 14.5
Samples: 4

Max nTPM: 21.3
Min nTPM: 11.0
Sample A Female 13.3
Sample B Female 12.5
Sample C Male 21.3
Sample D Male 11.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 9.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 9.5
Samples: 4

Max nTPM: 13.1
Min nTPM: 7.9
Sample A Male 7.9
Sample B Male 8.4
Sample C Female 8.5
Sample D Female 13.1
Hippocampal formation
nTPM: 9.6
Samples: 4

Max nTPM: 11.8
Min nTPM: 7.9
Sample A Male 7.9
Sample B Male 10.1
Sample C Female 11.8
Sample D Female 8.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.5
74363351 Antisense, RP_051019_03_C08, Mouse strain C57BL/6J (56 days, male) 5.5
73424053 Antisense, RP_051019_03_C08, Mouse strain C57BL/6J (56 days, male) 5.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.