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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:144.2 nTPM
HPA:144.2 nTPM
GTEx:136.9 nTPM
FANTOM5:118.2 Scaled Tags Per Million
Pig:64.8 nTPM
Mouse:182.2 nTPM
Allen mouse:8.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA018524Antibody HPA067429
Glial cells Not detectedMedium
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 144.2
Sample id Sample description nTPM
Hippocampus
nTPM: 138.4
1898 Male, age 80, left hemisphere 148.9
2621 Female, age 67, right hemisphere 138.8
1855 Male, age 76, left hemisphere 138.3
2529 Female, age 94, left hemisphere 138.3
2148 Female, age 91, left hemisphere 133.6
1911 Female, age 85, right hemisphere 132.4
Dentate gyrus
nTPM: 140.4
2530 Female, age 94, left hemisphere 150.5
1927 Female, age 91, both hemispheres 143.8
2010 Male, age 76, both hemispheres 141.2
2528 Male, age 74, both hemispheres 139.0
2246 Female, age 85, both hemispheres 138.2
2531 Female, age 67, both hemispheres 129.9
Entorhinal gyrus
nTPM: 138.2
2764 Male, age 80, right hemisphere 143.9
1938 Female, age 85, left hemisphere 141.5
2613 Female, age 94, left hemisphere 139.4
1787 Male, age 76, left hemisphere 138.8
2117 Female, age 91, right hemisphere 135.7
2686 Male, age 75, right hemisphere 129.7
Hippocampus, CA1
nTPM: 144.2
2749 Male, age 80, left hemisphere 162.6
2527 Male, age 74, both hemispheres 146.8
2082 Female, age 91, right hemisphere 139.0
1873 Female, age 85, both hemispheres 137.2
2045 Male, age 76, both hemispheres 135.5
Hippocampus, CA2
nTPM: 141.3
1963 Male, age 80, left hemisphere 146.9
2249 Male, age 74, both hemispheres 145.7
2437 Female, age 94, left hemisphere 145.4
1892 Male, age 76, both hemispheres 143.8
1940 Female, age 85, left hemisphere 133.8
2113 Female, age 91, right hemisphere 132.0
Hippocampus, CA3
nTPM: 144.1
2436 Male, age 74, both hemispheres 164.3
2137 Male, age 80, left hemisphere 152.1
2620 Female, age 94, left hemisphere 141.1
1867 Male, age 76, both hemispheres 139.7
1891 Female, age 85, both hemispheres 134.4
2861 Female, age 67, both hemispheres 133.2
Parahippocampal cortex
nTPM: 136.2
2250 Female, age 67, right hemisphere 142.9
1990 Female, age 91, right hemisphere 141.0
2245 Female, age 91, both hemispheres 140.3
1933 Female, age 85, both hemispheres 138.1
2532 Female, age 72, left hemisphere 138.0
1850 Male, age 80, both hemispheres 137.8
2018 Male, age 76, both hemispheres 132.0
2622 Female, age 67, right hemisphere 131.7
2693 Female, age 94, both hemispheres 130.5
2692 Male, age 74, both hemispheres 129.9
Perirhinal gyrus
nTPM: 142.3
1847 Female, age 91, left hemisphere 151.0
1794 Male, age 80, right hemisphere 147.5
2521 Female, age 94, right hemisphere 143.5
1841 Female, age 85, right hemisphere 137.7
2848 Male, age 76, right hemisphere 131.8
Subiculum
nTPM: 138.0
1901 Male, age 80, both hemispheres 141.6
1977 Female, age 85, both hemispheres 141.5
2619 Male, age 74, both hemispheres 140.7
2438 Female, age 94, left hemisphere 139.4
2042 Male, age 76, both hemispheres 132.6
2729 Female, age 91, right hemisphere 132.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 136.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 136.9
Samples: 197

Max nTPM: 288.0
Min nTPM: 56.0
Std nTPM: 40.5
Median nTPM: 132.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 288.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 286.8
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 280.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 268.6
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 263.3
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 239.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 237.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 237.0
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 234.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 229.0
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 226.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 118.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 118.2
FF:10169-103B7 60 years, female 132.8
FF:10153-102I9 76 years, female 103.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 64.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 64.8
Samples: 4

Max nTPM: 92.9
Min nTPM: 45.2
Sample A Female 92.9
Sample B Female 59.2
Sample C Male 62.0
Sample D Male 45.2
Entorhinal cortex
nTPM: 53.6
Samples: 4

Max nTPM: 68.7
Min nTPM: 39.6
Sample A Female 49.0
Sample B Female 68.7
Sample C Male 57.0
Sample D Male 39.6
Subiculum
nTPM: 51.6
Samples: 4

Max nTPM: 70.3
Min nTPM: 40.1
Sample A Female 70.3
Sample B Female 48.3
Sample C Male 47.8
Sample D Male 40.1
Ventral hippocampus
nTPM: 61.1
Samples: 4

Max nTPM: 78.0
Min nTPM: 42.3
Sample A Female 66.6
Sample B Female 42.3
Sample C Male 78.0
Sample D Male 57.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 182.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 173.5
Samples: 4

Max nTPM: 189.7
Min nTPM: 159.9
Sample A Male 159.9
Sample B Male 179.5
Sample C Female 189.7
Sample D Female 164.9
Hippocampal formation
nTPM: 182.2
Samples: 4

Max nTPM: 194.5
Min nTPM: 166.3
Sample A Male 194.0
Sample B Male 166.3
Sample C Female 174.0
Sample D Female 194.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.1
74819243 Antisense, RP_060315_02_C07, Mouse strain C57BL/6J (56 days, male) 8.2
68910967 Antisense, RP_050118_01_A01, Mouse strain C57BL/6J (56 days, male) 7.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.