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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:21.0 nTPM
HPA:21.0 nTPM
GTEx:23.4 nTPM
FANTOM5:16.5 Scaled Tags Per Million
Pig:38.8 nTPM
Mouse:24.6 nTPM
Allen mouse:8.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA074471
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 21.0
Sample id Sample description nTPM
Hippocampus
nTPM: 18.4
1898 Male, age 80, left hemisphere 28.7
2621 Female, age 67, right hemisphere 22.1
1855 Male, age 76, left hemisphere 20.4
2148 Female, age 91, left hemisphere 19.7
1911 Female, age 85, right hemisphere 10.4
2529 Female, age 94, left hemisphere 8.7
Dentate gyrus
nTPM: 21.0
1927 Female, age 91, both hemispheres 27.2
2530 Female, age 94, left hemisphere 25.4
2010 Male, age 76, both hemispheres 23.1
2531 Female, age 67, both hemispheres 18.4
2528 Male, age 74, both hemispheres 17.4
2246 Female, age 85, both hemispheres 14.3
Entorhinal gyrus
nTPM: 10.6
2686 Male, age 75, right hemisphere 14.7
2613 Female, age 94, left hemisphere 12.9
2764 Male, age 80, right hemisphere 11.3
1938 Female, age 85, left hemisphere 9.2
2117 Female, age 91, right hemisphere 8.0
1787 Male, age 76, left hemisphere 7.7
Hippocampus, CA1
nTPM: 20.7
2749 Male, age 80, left hemisphere 38.3
1873 Female, age 85, both hemispheres 27.6
2527 Male, age 74, both hemispheres 15.7
2045 Male, age 76, both hemispheres 13.3
2082 Female, age 91, right hemisphere 8.7
Hippocampus, CA2
nTPM: 17.4
1963 Male, age 80, left hemisphere 35.9
1892 Male, age 76, both hemispheres 24.7
2437 Female, age 94, left hemisphere 16.5
2249 Male, age 74, both hemispheres 12.7
2113 Female, age 91, right hemisphere 8.5
1940 Female, age 85, left hemisphere 6.1
Hippocampus, CA3
nTPM: 18.6
2137 Male, age 80, left hemisphere 26.9
2620 Female, age 94, left hemisphere 23.0
2861 Female, age 67, both hemispheres 22.8
1867 Male, age 76, both hemispheres 16.3
2436 Male, age 74, both hemispheres 12.6
1891 Female, age 85, both hemispheres 10.1
Parahippocampal cortex
nTPM: 10.9
2622 Female, age 67, right hemisphere 14.4
2693 Female, age 94, both hemispheres 13.1
1850 Male, age 80, both hemispheres 12.5
2245 Female, age 91, both hemispheres 11.7
2532 Female, age 72, left hemisphere 11.0
1990 Female, age 91, right hemisphere 10.2
2692 Male, age 74, both hemispheres 10.0
2250 Female, age 67, right hemisphere 9.8
1933 Female, age 85, both hemispheres 9.0
2018 Male, age 76, both hemispheres 7.5
Perirhinal gyrus
nTPM: 11.1
2521 Female, age 94, right hemisphere 12.7
1847 Female, age 91, left hemisphere 11.9
1794 Male, age 80, right hemisphere 11.6
2848 Male, age 76, right hemisphere 9.9
1841 Female, age 85, right hemisphere 9.3
Subiculum
nTPM: 11.0
1901 Male, age 80, both hemispheres 14.8
2438 Female, age 94, left hemisphere 12.0
2729 Female, age 91, right hemisphere 10.9
2042 Male, age 76, both hemispheres 10.0
1977 Female, age 85, both hemispheres 9.4
2619 Male, age 74, both hemispheres 8.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 23.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 23.4
Samples: 197

Max nTPM: 163.5
Min nTPM: 0.0
Std nTPM: 23.5
Median nTPM: 17.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 163.5
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 110.0
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 99.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 97.9
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 90.8
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 85.6
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 84.4
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 84.3
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 82.9
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 74.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 71.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 16.5
FF:10169-103B7 60 years, female 26.1
FF:10153-102I9 76 years, female 7.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 38.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 38.8
Samples: 4

Max nTPM: 47.9
Min nTPM: 23.8
Sample A Female 47.9
Sample B Female 39.7
Sample C Male 43.7
Sample D Male 23.8
Entorhinal cortex
nTPM: 22.4
Samples: 4

Max nTPM: 29.0
Min nTPM: 16.0
Sample A Female 20.2
Sample B Female 29.0
Sample C Male 16.0
Sample D Male 24.2
Subiculum
nTPM: 19.6
Samples: 4

Max nTPM: 23.6
Min nTPM: 17.1
Sample A Female 23.6
Sample B Female 20.6
Sample C Male 17.1
Sample D Male 17.2
Ventral hippocampus
nTPM: 31.5
Samples: 4

Max nTPM: 41.6
Min nTPM: 19.1
Sample A Female 41.6
Sample B Female 19.1
Sample C Male 34.5
Sample D Male 30.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 24.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 18.8
Samples: 4

Max nTPM: 20.0
Min nTPM: 17.7
Sample A Male 19.7
Sample B Male 17.9
Sample C Female 17.7
Sample D Female 20.0
Hippocampal formation
nTPM: 24.6
Samples: 4

Max nTPM: 34.4
Min nTPM: 16.3
Sample A Male 16.3
Sample B Male 26.7
Sample C Female 34.4
Sample D Female 21.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.3
73994714 Antisense, RP_051214_03_E09, Mouse strain C57BL/6J (56 days, male) 8.9
69735688 Antisense, RP_050503_03_C10, Mouse strain C57BL/6J (56 days, male) 7.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.