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SLC38A1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi 		57.080
RNA expressioni
Consensus:15.3 nTPM
HPA:15.3 nTPM
GTEx:12.5 nTPM
FANTOM5:67.6 Scaled Tags Per Million
Mouse:42.1 nTPM
Allen mouse:4.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA052272
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA039460
Hippocampal formation mean intensity 57.080
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 29.770
Molecular layer of the dentate gyrus 21.190
Granular dentate gyrus 34.150
CA1 - oriens layer 21.340
CA1 - pyramidal layer 38.320
CA1 - radiatum layer 14.390
CA2 - oriens layer 34.210
CA2 - pyramidal layer 57.080
CA2 - radiatum layer 28.640
CA3 - oriens layer 29.160
CA3 - pyramidal layer 45.340
CA3 - radiatum layer 25.860
Stratum lucidum 21.650
Lacunosum moleculare 18.530
Subiculum 44.820

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 15.3
Sample id Sample description nTPM
Hippocampus
nTPM: 14.6
2529 Female, age 94, left hemisphere 21.8
1898 Male, age 80, left hemisphere 20.0
1911 Female, age 85, right hemisphere 18.8
2148 Female, age 91, left hemisphere 13.2
2621 Female, age 67, right hemisphere 10.6
1855 Male, age 76, left hemisphere 3.1
Dentate gyrus
nTPM: 15.3
2528 Male, age 74, both hemispheres 37.9
2530 Female, age 94, left hemisphere 11.5
2531 Female, age 67, both hemispheres 11.5
1927 Female, age 91, both hemispheres 11.4
2246 Female, age 85, both hemispheres 10.0
2010 Male, age 76, both hemispheres 9.6
Entorhinal gyrus
nTPM: 12.6
2117 Female, age 91, right hemisphere 24.9
2613 Female, age 94, left hemisphere 12.7
2764 Male, age 80, right hemisphere 11.5
1938 Female, age 85, left hemisphere 9.7
1787 Male, age 76, left hemisphere 9.4
2686 Male, age 75, right hemisphere 7.3
Hippocampus, CA1
nTPM: 12.3
1873 Female, age 85, both hemispheres 21.3
2749 Male, age 80, left hemisphere 14.3
2527 Male, age 74, both hemispheres 14.1
2082 Female, age 91, right hemisphere 10.2
2045 Male, age 76, both hemispheres 1.7
Hippocampus, CA2
nTPM: 12.4
2249 Male, age 74, both hemispheres 19.4
2113 Female, age 91, right hemisphere 16.0
2437 Female, age 94, left hemisphere 14.5
1892 Male, age 76, both hemispheres 11.7
1963 Male, age 80, left hemisphere 7.9
1940 Female, age 85, left hemisphere 4.6
Hippocampus, CA3
nTPM: 14.4
2620 Female, age 94, left hemisphere 23.0
1891 Female, age 85, both hemispheres 22.8
2436 Male, age 74, both hemispheres 12.0
2137 Male, age 80, left hemisphere 11.5
1867 Male, age 76, both hemispheres 10.4
2861 Female, age 67, both hemispheres 6.8
Parahippocampal cortex
nTPM: 10.8
2693 Female, age 94, both hemispheres 16.8
1990 Female, age 91, right hemisphere 16.5
2250 Female, age 67, right hemisphere 15.8
1850 Male, age 80, both hemispheres 13.4
2245 Female, age 91, both hemispheres 12.0
1933 Female, age 85, both hemispheres 9.4
2532 Female, age 72, left hemisphere 7.9
2692 Male, age 74, both hemispheres 6.5
2622 Female, age 67, right hemisphere 5.2
2018 Male, age 76, both hemispheres 4.8
Perirhinal gyrus
nTPM: 14.1
2521 Female, age 94, right hemisphere 17.0
1847 Female, age 91, left hemisphere 16.6
1794 Male, age 80, right hemisphere 15.6
1841 Female, age 85, right hemisphere 12.7
2848 Male, age 76, right hemisphere 8.6
Subiculum
nTPM: 13.3
2729 Female, age 91, right hemisphere 26.2
1901 Male, age 80, both hemispheres 15.0
1977 Female, age 85, both hemispheres 14.1
2438 Female, age 94, left hemisphere 11.0
2619 Male, age 74, both hemispheres 8.9
2042 Male, age 76, both hemispheres 4.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 12.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.5
Samples: 197

Max nTPM: 34.0
Min nTPM: 4.8
Std nTPM: 4.6
Median nTPM: 11.6
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 34.0
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 33.0
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 27.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 26.7
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 23.3
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 23.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 22.8
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 22.1
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 22.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 21.3
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 20.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 67.6
FF:10153-102I9 76 years, female 72.5
FF:10169-103B7 60 years, female 62.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 42.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 42.1
Samples: 4

Max nTPM: 49.0
Min nTPM: 38.6
Sample A Male 41.1
Sample B Male 39.5
Sample C Female 38.6
Sample D Female 49.0
Hippocampal formation
nTPM: 36.9
Samples: 4

Max nTPM: 46.4
Min nTPM: 27.7
Sample A Male 27.7
Sample B Male 38.8
Sample C Female 46.4
Sample D Female 34.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.3
75988508 Antisense, RP_060530_02_G04, Mouse strain C57BL/6J (56 days, male) 8.0
75043149 Antisense, RP_051219_01_G05, Mouse strain C57BL/6J (56 days, male) 3.0
1844 Antisense, RP_040507_01_G08, Mouse strain C57BL/6J (56 days, male) 1.8
1845 Antisense, RP_040507_01_G08, Mouse strain C57BL/6J (56 days, male) 1.7

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.