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RFX4
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:36.0 nTPM
HPA:36.0 nTPM
GTEx:23.0 nTPM
FANTOM5:128.1 Scaled Tags Per Million
Mouse:14.6 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA050527
Glial cells Not detected
Neuronal cells Low


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 36.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 30.2
2289 Male, age 61, right hemisphere 43.1
2481 Female, age 94, left hemisphere 41.1
1854 Male, age 80, left hemisphere 30.0
2290 Female, age 72, unknown 29.2
1781 Male, age 74, unknown 26.7
1857 Female, age 85, left hemisphere 26.5
2288 Male, age 75, left hemisphere 24.3
2846 Female, age 79, unknown 21.1
Claustrum
nTPM: 18.7
2198 Male, age 80, both hemispheres 20.3
2645 Female, age 72, unknown 19.7
2196 Female, age 79, unknown 19.5
2284 Female, age 91, both hemispheres 19.2
2491 Male, age 75, both hemispheres 19.2
2392 Female, age 94, both hemispheres 19.0
1956 Male, age 74, unknown 18.1
2568 Male, age 61, both hemispheres 17.3
2292 Female, age 85, both hemispheres 16.1
Globus pallidus, externus
nTPM: 36.0
1996 Male, age 80, right hemisphere 52.3
2646 Male, age 61, right hemisphere 44.2
2772 Female, age 79, unknown 30.0
2567 Female, age 72, unknown 28.5
2395 Male, age 75, both hemispheres 25.2
Globus pallidus, internus
nTPM: 34.9
2037 Male, age 80, right hemisphere 45.6
2483 Female, age 94, right hemisphere 38.7
1818 Male, age 74, unknown 38.0
2778 Female, age 91, both hemispheres 32.3
2111 Female, age 85, right hemisphere 31.2
2287 Male, age 75, right hemisphere 29.5
2566 Female, age 72, unknown 28.8
Nucleus accumbens
nTPM: 24.8
2732 Male, age 80, right hemisphere 31.8
2391 Female, age 94, left hemisphere 28.3
1806 Female, age 85, left hemisphere 25.6
2824 Male, age 61, right hemisphere 25.2
2286 Male, age 75, left hemisphere 23.3
1856 Female, age 91, right hemisphere 22.5
2698 Female, age 72, unknown 22.3
1783 Male, age 74, unknown 19.2
Nucleus basalis of Meynert
nTPM: 31.0
2569 Male, age 61, both hemispheres 47.4
2393 Male, age 80, right hemisphere 33.1
2484 Female, age 94, left hemisphere 25.7
2821 Male, age 75, both hemispheres 17.6
Nucleus of the diagonal band
nTPM: 23.5
1979 Male, age 74, unknown 28.4
1812 Female, age 91, both hemispheres 26.2
2775 Male, age 80, right hemisphere 23.6
2195 Female, age 85, both hemispheres 20.7
2029 Male, age 61, right hemisphere 18.4
Olfactory tubercle
nTPM: 23.7
1846 Male, age 80, right hemisphere 29.1
2856 Male, age 75, right hemisphere 26.9
2487 Female, age 94, left hemisphere 21.5
1998 Female, age 91, both hemispheres 17.5
Putamen
nTPM: 27.6
2482 Female, age 94, left hemisphere 33.6
2489 Female, age 72, unknown 32.5
1829 Male, age 74, unknown 29.7
2647 Male, age 75, left hemisphere 29.5
1838 Male, age 80, right hemisphere 24.3
2466 Female, age 79, unknown 22.3
1937 Female, age 91, right hemisphere 21.3
Septal nuclei
nTPM: 27.3
2199 Male, age 80, right hemisphere 45.2
2059 Female, age 85, both hemispheres 28.7
2394 Male, age 61, left hemisphere 28.4
2009 Female, age 91, both hemispheres 28.0
2629 Female, age 94, right hemisphere 25.4
2031 Female, age 72, unknown 17.6
1960 Male, age 74, unknown 17.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 23.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 23.0
Samples: 246

Max nTPM: 70.3
Min nTPM: 3.1
Std nTPM: 10.6
Median nTPM: 20.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 70.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 63.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 54.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 53.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 50.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 46.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 45.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 45.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 43.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 43.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 42.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 18.8
Samples: 246

Max nTPM: 61.9
Min nTPM: 5.5
Std nTPM: 9.5
Median nTPM: 16.1
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 61.9
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 61.8
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 55.4
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 49.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 46.9
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 46.9
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 44.3
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 43.6
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 41.0
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 40.7
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 40.4
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Brain - Putamen (basal ganglia)
Average nTPM: 20.6
Samples: 205

Max nTPM: 59.3
Min nTPM: 2.3
Std nTPM: 10.7
Median nTPM: 18.6
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 59.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 59.2
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 53.8
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 51.7
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 49.5
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 49.0
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 47.2
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 45.5
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 43.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 41.1
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 40.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 128.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 85.3
FF:10164-103B2 76 years, female 85.3
Globus pallidus
Scaled Tags Per Million: 128.1
FF:10175-103C4 60 years, female 165.7
FF:10161-103A8 76 years, female 90.5
Nucleus accumbens
Scaled Tags Per Million: 70.7
FF:10037-101F1 23-56 years, mixed 70.7
Putamen
Scaled Tags Per Million: 85.4
FF:10176-103C5 60 years, female 85.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 14.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 14.6
Samples: 4

Max nTPM: 15.5
Min nTPM: 13.4
Sample A Male 15.5
Sample B Male 15.4
Sample C Female 14.2
Sample D Female 13.4
Septum
nTPM: 11.4
Samples: 4

Max nTPM: 12.5
Min nTPM: 9.8
Sample A Male 12.3
Sample B Male 12.5
Sample C Female 9.8
Sample D Female 10.8
Ventral forebrain
nTPM: 12.2
Samples: 4

Max nTPM: 13.7
Min nTPM: 11.2
Sample A Male 12.2
Sample B Male 13.7
Sample C Female 11.2
Sample D Female 11.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
71249068 Antisense, RP_050407_03_H09, Mouse strain C57BL/6J (56 days, male) 0.1
69290417 Antisense, RP_050407_03_H09, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.0
71249068 Antisense, RP_050407_03_H09, Mouse strain C57BL/6J (56 days, male) 0.0
69290417 Antisense, RP_050407_03_H09, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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