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RFX4
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:28.8 nTPM
HPA:28.8 nTPM
GTEx:13.4 nTPM
FANTOM5:140.8 Scaled Tags Per Million
Mouse:9.8 nTPM
Allen mouse:0.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA050527
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 28.8
Sample id Sample description nTPM
Hippocampus
nTPM: 28.8
2148 Female, age 91, left hemisphere 33.3
2529 Female, age 94, left hemisphere 32.2
1911 Female, age 85, right hemisphere 30.4
1898 Male, age 80, left hemisphere 29.8
1855 Male, age 76, left hemisphere 25.5
2621 Female, age 67, right hemisphere 21.5
Dentate gyrus
nTPM: 26.5
2528 Male, age 74, both hemispheres 38.2
2246 Female, age 85, both hemispheres 29.4
1927 Female, age 91, both hemispheres 24.2
2010 Male, age 76, both hemispheres 23.4
2530 Female, age 94, left hemisphere 22.2
2531 Female, age 67, both hemispheres 21.3
Entorhinal gyrus
nTPM: 23.5
2117 Female, age 91, right hemisphere 33.7
1787 Male, age 76, left hemisphere 24.2
2686 Male, age 75, right hemisphere 23.3
1938 Female, age 85, left hemisphere 21.1
2764 Male, age 80, right hemisphere 19.9
2613 Female, age 94, left hemisphere 18.9
Hippocampus, CA1
nTPM: 25.5
2527 Male, age 74, both hemispheres 31.8
1873 Female, age 85, both hemispheres 30.2
2082 Female, age 91, right hemisphere 29.5
2749 Male, age 80, left hemisphere 18.3
2045 Male, age 76, both hemispheres 17.9
Hippocampus, CA2
nTPM: 27.7
1940 Female, age 85, left hemisphere 35.8
2249 Male, age 74, both hemispheres 34.3
2113 Female, age 91, right hemisphere 33.2
1963 Male, age 80, left hemisphere 24.5
2437 Female, age 94, left hemisphere 23.1
1892 Male, age 76, both hemispheres 15.2
Hippocampus, CA3
nTPM: 24.7
1891 Female, age 85, both hemispheres 32.0
2620 Female, age 94, left hemisphere 29.0
2436 Male, age 74, both hemispheres 26.7
2861 Female, age 67, both hemispheres 24.6
2137 Male, age 80, left hemisphere 20.3
1867 Male, age 76, both hemispheres 15.8
Parahippocampal cortex
nTPM: 23.2
2692 Male, age 74, both hemispheres 30.8
2250 Female, age 67, right hemisphere 28.0
2622 Female, age 67, right hemisphere 26.1
1990 Female, age 91, right hemisphere 24.7
2245 Female, age 91, both hemispheres 23.3
1933 Female, age 85, both hemispheres 21.7
1850 Male, age 80, both hemispheres 21.6
2693 Female, age 94, both hemispheres 20.1
2532 Female, age 72, left hemisphere 17.9
2018 Male, age 76, both hemispheres 17.8
Perirhinal gyrus
nTPM: 20.4
1847 Female, age 91, left hemisphere 21.5
1841 Female, age 85, right hemisphere 21.1
2521 Female, age 94, right hemisphere 20.0
2848 Male, age 76, right hemisphere 19.8
1794 Male, age 80, right hemisphere 19.7
Subiculum
nTPM: 27.9
2729 Female, age 91, right hemisphere 39.4
2619 Male, age 74, both hemispheres 34.9
1901 Male, age 80, both hemispheres 24.3
1977 Female, age 85, both hemispheres 23.5
2438 Female, age 94, left hemisphere 22.8
2042 Male, age 76, both hemispheres 22.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.4
Samples: 197

Max nTPM: 47.2
Min nTPM: 2.2
Std nTPM: 6.5
Median nTPM: 12.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 47.2
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 38.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 34.5
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 30.7
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 28.8
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 28.0
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 27.6
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 27.4
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 27.0
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 27.0
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 25.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 140.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 140.8
FF:10169-103B7 60 years, female 157.9
FF:10153-102I9 76 years, female 123.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 9.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 9.8
Samples: 4

Max nTPM: 11.1
Min nTPM: 9.1
Sample A Male 11.1
Sample B Male 9.4
Sample C Female 9.7
Sample D Female 9.1
Hippocampal formation
nTPM: 8.9
Samples: 4

Max nTPM: 10.8
Min nTPM: 7.7
Sample A Male 10.8
Sample B Male 9.2
Sample C Female 7.7
Sample D Female 7.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.3
69290417 Antisense, RP_050407_03_H09, Mouse strain C57BL/6J (56 days, male) 0.3
71249068 Antisense, RP_050407_03_H09, Mouse strain C57BL/6J (56 days, male) 0.1

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.