ABOUTMENU
HELP
NEWS
FBXO9
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.0 nTPM
HPA:25.0 nTPM
GTEx:28.6 nTPM
FANTOM5:69.4 Scaled Tags Per Million
Pig:24.7 nTPM
Mouse:75.9 nTPM
Allen mouse:4.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 25.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 21.2
2288 Male, age 75, left hemisphere 26.0
2846 Female, age 79, unknown 24.1
2481 Female, age 94, left hemisphere 21.6
2290 Female, age 72, unknown 21.1
1781 Male, age 74, unknown 20.6
1857 Female, age 85, left hemisphere 19.5
1854 Male, age 80, left hemisphere 18.6
2289 Male, age 61, right hemisphere 18.3
Claustrum
nTPM: 24.8
1956 Male, age 74, unknown 27.2
2292 Female, age 85, both hemispheres 25.9
2284 Female, age 91, both hemispheres 25.7
2491 Male, age 75, both hemispheres 25.4
2392 Female, age 94, both hemispheres 25.1
2198 Male, age 80, both hemispheres 24.5
2196 Female, age 79, unknown 24.2
2645 Female, age 72, unknown 23.2
2568 Male, age 61, both hemispheres 22.4
Globus pallidus, externus
nTPM: 21.9
2772 Female, age 79, unknown 24.1
2395 Male, age 75, both hemispheres 23.4
2646 Male, age 61, right hemisphere 22.5
1996 Male, age 80, right hemisphere 20.6
2567 Female, age 72, unknown 19.0
Globus pallidus, internus
nTPM: 23.7
2287 Male, age 75, right hemisphere 32.4
2778 Female, age 91, both hemispheres 26.1
2483 Female, age 94, right hemisphere 23.8
1818 Male, age 74, unknown 22.1
2111 Female, age 85, right hemisphere 21.9
2037 Male, age 80, right hemisphere 21.5
2566 Female, age 72, unknown 18.4
Nucleus accumbens
nTPM: 22.2
2286 Male, age 75, left hemisphere 28.3
2391 Female, age 94, left hemisphere 24.7
2824 Male, age 61, right hemisphere 21.7
1806 Female, age 85, left hemisphere 21.5
2698 Female, age 72, unknown 21.5
1856 Female, age 91, right hemisphere 20.9
1783 Male, age 74, unknown 19.5
2732 Male, age 80, right hemisphere 19.5
Nucleus basalis of Meynert
nTPM: 20.4
2821 Male, age 75, both hemispheres 22.8
2484 Female, age 94, left hemisphere 21.4
2393 Male, age 80, right hemisphere 19.9
2569 Male, age 61, both hemispheres 17.4
Nucleus of the diagonal band
nTPM: 23.0
2195 Female, age 85, both hemispheres 23.7
2029 Male, age 61, right hemisphere 23.4
2775 Male, age 80, right hemisphere 23.3
1979 Male, age 74, unknown 22.8
1812 Female, age 91, both hemispheres 21.7
Olfactory tubercle
nTPM: 25.0
1998 Female, age 91, both hemispheres 26.8
2856 Male, age 75, right hemisphere 26.4
2487 Female, age 94, left hemisphere 25.5
1846 Male, age 80, right hemisphere 21.2
Putamen
nTPM: 23.5
2466 Female, age 79, unknown 26.0
2482 Female, age 94, left hemisphere 25.5
1829 Male, age 74, unknown 24.2
2647 Male, age 75, left hemisphere 23.8
1937 Female, age 91, right hemisphere 23.3
2489 Female, age 72, unknown 21.8
1838 Male, age 80, right hemisphere 19.9
Septal nuclei
nTPM: 21.5
1960 Male, age 74, unknown 24.9
2031 Female, age 72, unknown 23.4
2629 Female, age 94, right hemisphere 23.1
2009 Female, age 91, both hemispheres 22.2
2059 Female, age 85, both hemispheres 19.8
2199 Male, age 80, right hemisphere 19.7
2394 Male, age 61, left hemisphere 17.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 28.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 28.1
Samples: 246

Max nTPM: 79.4
Min nTPM: 11.2
Std nTPM: 9.5
Median nTPM: 26.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 79.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 67.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 54.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 54.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 49.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 48.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 47.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 47.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 47.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 47.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 45.4
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.2
Samples: 246

Max nTPM: 54.0
Min nTPM: 10.5
Std nTPM: 8.3
Median nTPM: 27.6
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 54.0
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 51.6
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 51.3
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 47.4
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 46.1
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 46.1
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 45.2
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 44.7
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 44.4
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 43.9
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 43.4
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 28.6
Samples: 205

Max nTPM: 59.8
Min nTPM: 12.8
Std nTPM: 9.2
Median nTPM: 26.7
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 59.8
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 56.7
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 56.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 51.8
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 51.2
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 51.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 51.0
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 50.3
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 50.3
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 50.1
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 48.8
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 47.7
FF:10164-103B2 76 years, female 47.7
Globus pallidus
Scaled Tags Per Million: 68.8
FF:10175-103C4 60 years, female 74.9
FF:10161-103A8 76 years, female 62.6
Nucleus accumbens
Scaled Tags Per Million: 69.4
FF:10037-101F1 23-56 years, mixed 69.4
Putamen
Scaled Tags Per Million: 52.7
FF:10176-103C5 60 years, female 52.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 24.7
Pig sample Sample description nTPM
Caudate
nTPM: 19.7
Samples: 4

Max nTPM: 21.8
Min nTPM: 18.8
Sample A Female 19.5
Sample B Female 18.8
Sample C Male 21.8
Sample D Male 18.8
Putamen
nTPM: 24.8
Samples: 4

Max nTPM: 31.9
Min nTPM: 19.3
Sample A Female 22.4
Sample B Female 19.3
Sample C Male 31.9
Sample D Male 25.4
Septum
nTPM: 24.4
Samples: 4

Max nTPM: 28.7
Min nTPM: 21.1
Sample A Female 22.4
Sample B Female 21.1
Sample C Male 28.7
Sample D Male 25.3
Ventral pallidum
nTPM: 22.6
Samples: 4

Max nTPM: 27.2
Min nTPM: 19.2
Sample A Female 19.2
Sample B Female 23.3
Sample C Male 27.2
Sample D Male 20.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 75.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 67.1
Samples: 4

Max nTPM: 72.7
Min nTPM: 62.1
Sample A Male 66.9
Sample B Male 62.1
Sample C Female 72.7
Sample D Female 66.6
Septum
nTPM: 76.0
Samples: 4

Max nTPM: 84.5
Min nTPM: 69.4
Sample A Male 84.5
Sample B Male 75.2
Sample C Female 69.4
Sample D Female 74.7
Ventral forebrain
nTPM: 73.9
Samples: 4

Max nTPM: 77.3
Min nTPM: 66.9
Sample A Male 77.3
Sample B Male 75.5
Sample C Female 66.9
Sample D Female 75.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.2
74800954 Antisense, RP_060315_02_A11, Mouse strain C57BL/6J (56 days, male) 2.9
68193058 Antisense, RP_040831_01_D05, Mouse strain C57BL/6J (56 days, male) 1.5
Pallidum
Expression energy: 4.0
74800954 Antisense, RP_060315_02_A11, Mouse strain C57BL/6J (56 days, male) 5.3
68193058 Antisense, RP_040831_01_D05, Mouse strain C57BL/6J (56 days, male) 2.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.