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PTP4A1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:24.7 nTPM
HPA:24.7 nTPM
GTEx:36.5 nTPM
FANTOM5:1.3 Scaled Tags Per Million
Pig:43.9 nTPM
Mouse:1.3 nTPM
Allen mouse:6.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003281
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 24.7
Sample id Sample description nTPM
Hippocampus
nTPM: 22.0
1898 Male, age 80, left hemisphere 25.9
1855 Male, age 76, left hemisphere 23.1
2529 Female, age 94, left hemisphere 22.6
1911 Female, age 85, right hemisphere 21.8
2621 Female, age 67, right hemisphere 19.9
2148 Female, age 91, left hemisphere 18.8
Dentate gyrus
nTPM: 22.9
2010 Male, age 76, both hemispheres 31.7
2530 Female, age 94, left hemisphere 23.7
2528 Male, age 74, both hemispheres 22.7
2246 Female, age 85, both hemispheres 21.3
1927 Female, age 91, both hemispheres 20.9
2531 Female, age 67, both hemispheres 17.2
Entorhinal gyrus
nTPM: 21.1
2117 Female, age 91, right hemisphere 23.8
1938 Female, age 85, left hemisphere 22.8
1787 Male, age 76, left hemisphere 22.5
2764 Male, age 80, right hemisphere 20.4
2686 Male, age 75, right hemisphere 19.7
2613 Female, age 94, left hemisphere 17.6
Hippocampus, CA1
nTPM: 24.7
2045 Male, age 76, both hemispheres 30.9
2749 Male, age 80, left hemisphere 24.9
2527 Male, age 74, both hemispheres 23.3
1873 Female, age 85, both hemispheres 22.8
2082 Female, age 91, right hemisphere 21.5
Hippocampus, CA2
nTPM: 24.1
2249 Male, age 74, both hemispheres 29.2
1892 Male, age 76, both hemispheres 27.0
1963 Male, age 80, left hemisphere 24.3
2113 Female, age 91, right hemisphere 21.6
1940 Female, age 85, left hemisphere 21.4
2437 Female, age 94, left hemisphere 21.2
Hippocampus, CA3
nTPM: 22.6
1867 Male, age 76, both hemispheres 29.6
2436 Male, age 74, both hemispheres 28.9
2137 Male, age 80, left hemisphere 24.1
1891 Female, age 85, both hemispheres 22.0
2620 Female, age 94, left hemisphere 16.0
2861 Female, age 67, both hemispheres 15.1
Parahippocampal cortex
nTPM: 22.1
2018 Male, age 76, both hemispheres 29.5
1850 Male, age 80, both hemispheres 24.2
1933 Female, age 85, both hemispheres 22.7
2250 Female, age 67, right hemisphere 22.4
1990 Female, age 91, right hemisphere 22.3
2532 Female, age 72, left hemisphere 21.7
2693 Female, age 94, both hemispheres 21.3
2692 Male, age 74, both hemispheres 20.5
2245 Female, age 91, both hemispheres 19.7
2622 Female, age 67, right hemisphere 16.7
Perirhinal gyrus
nTPM: 22.7
1841 Female, age 85, right hemisphere 23.5
1794 Male, age 80, right hemisphere 23.3
1847 Female, age 91, left hemisphere 22.7
2521 Female, age 94, right hemisphere 22.4
2848 Male, age 76, right hemisphere 21.6
Subiculum
nTPM: 23.2
2042 Male, age 76, both hemispheres 27.8
1977 Female, age 85, both hemispheres 24.2
1901 Male, age 80, both hemispheres 23.5
2729 Female, age 91, right hemisphere 22.8
2438 Female, age 94, left hemisphere 22.4
2619 Male, age 74, both hemispheres 18.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 36.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 36.5
Samples: 197

Max nTPM: 122.6
Min nTPM: 18.0
Std nTPM: 12.3
Median nTPM: 33.8
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 122.6
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 76.7
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 73.3
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 72.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 68.0
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 66.6
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 63.4
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 61.3
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 61.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 60.1
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 60.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1.3
FF:10169-103B7 60 years, female 2.0
FF:10153-102I9 76 years, female 0.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 43.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 42.5
Samples: 4

Max nTPM: 55.5
Min nTPM: 30.1
Sample A Female 55.5
Sample B Female 37.8
Sample C Male 46.5
Sample D Male 30.1
Entorhinal cortex
nTPM: 41.0
Samples: 4

Max nTPM: 47.2
Min nTPM: 33.9
Sample A Female 36.5
Sample B Female 47.2
Sample C Male 46.5
Sample D Male 33.9
Subiculum
nTPM: 43.9
Samples: 4

Max nTPM: 54.4
Min nTPM: 38.6
Sample A Female 54.4
Sample B Female 41.5
Sample C Male 38.6
Sample D Male 41.0
Ventral hippocampus
nTPM: 38.6
Samples: 4

Max nTPM: 42.6
Min nTPM: 34.5
Sample A Female 42.1
Sample B Female 34.5
Sample C Male 42.6
Sample D Male 35.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 1.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 0.7
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.4
Sample A Male 0.8
Sample B Male 0.9
Sample C Female 0.4
Sample D Female 0.8
Hippocampal formation
nTPM: 1.3
Samples: 4

Max nTPM: 2.5
Min nTPM: 0.4
Sample A Male 0.4
Sample B Male 1.2
Sample C Female 2.5
Sample D Female 1.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.5
75079765 Antisense, RP_060412_02_F03, Mouse strain C57BL/6J (56 days, male) 7.2
69014440 Antisense, RP_050310_01_B03, Mouse strain C57BL/6J (56 days, male) 5.8
Hippocampal formation
Expression energy: 6.5
75079765 Antisense, RP_060412_02_F03, Mouse strain C57BL/6J (56 days, male) 7.2
69014440 Antisense, RP_050310_01_B03, Mouse strain C57BL/6J (56 days, male) 5.8

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.