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SNX3
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:224.3 nTPM
HPA:224.3 nTPM
GTEx:223.8 nTPM
FANTOM5:239.5 Scaled Tags Per Million
Pig:157.1 nTPM
Mouse:184.6 nTPM
Allen mouse:17.2 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 224.3
Sample id Sample description nTPM
Hippocampus
nTPM: 219.1
1898 Male, age 80, left hemisphere 233.1
1855 Male, age 76, left hemisphere 232.4
2621 Female, age 67, right hemisphere 217.7
1911 Female, age 85, right hemisphere 213.3
2529 Female, age 94, left hemisphere 212.1
2148 Female, age 91, left hemisphere 205.8
Dentate gyrus
nTPM: 212.6
2010 Male, age 76, both hemispheres 233.4
1927 Female, age 91, both hemispheres 221.0
2246 Female, age 85, both hemispheres 215.5
2528 Male, age 74, both hemispheres 207.7
2530 Female, age 94, left hemisphere 207.3
2531 Female, age 67, both hemispheres 190.8
Entorhinal gyrus
nTPM: 204.2
1938 Female, age 85, left hemisphere 223.4
1787 Male, age 76, left hemisphere 209.9
2117 Female, age 91, right hemisphere 204.7
2764 Male, age 80, right hemisphere 200.1
2613 Female, age 94, left hemisphere 195.2
2686 Male, age 75, right hemisphere 192.1
Hippocampus, CA1
nTPM: 224.3
2749 Male, age 80, left hemisphere 249.7
1873 Female, age 85, both hemispheres 232.5
2045 Male, age 76, both hemispheres 218.8
2527 Male, age 74, both hemispheres 216.0
2082 Female, age 91, right hemisphere 204.5
Hippocampus, CA2
nTPM: 216.8
1892 Male, age 76, both hemispheres 232.0
1963 Male, age 80, left hemisphere 228.0
2249 Male, age 74, both hemispheres 225.1
1940 Female, age 85, left hemisphere 208.8
2437 Female, age 94, left hemisphere 203.5
2113 Female, age 91, right hemisphere 203.2
Hippocampus, CA3
nTPM: 213.6
2137 Male, age 80, left hemisphere 232.6
2436 Male, age 74, both hemispheres 223.9
1867 Male, age 76, both hemispheres 220.7
1891 Female, age 85, both hemispheres 212.2
2620 Female, age 94, left hemisphere 202.9
2861 Female, age 67, both hemispheres 189.4
Parahippocampal cortex
nTPM: 211.7
1850 Male, age 80, both hemispheres 223.2
1933 Female, age 85, both hemispheres 221.1
2250 Female, age 67, right hemisphere 218.0
2018 Male, age 76, both hemispheres 217.7
2245 Female, age 91, both hemispheres 212.8
1990 Female, age 91, right hemisphere 212.1
2532 Female, age 72, left hemisphere 210.5
2693 Female, age 94, both hemispheres 205.1
2692 Male, age 74, both hemispheres 198.6
2622 Female, age 67, right hemisphere 197.7
Perirhinal gyrus
nTPM: 222.5
1841 Female, age 85, right hemisphere 233.0
1847 Female, age 91, left hemisphere 232.1
1794 Male, age 80, right hemisphere 218.7
2521 Female, age 94, right hemisphere 215.4
2848 Male, age 76, right hemisphere 213.1
Subiculum
nTPM: 213.1
2438 Female, age 94, left hemisphere 225.5
2042 Male, age 76, both hemispheres 217.6
1901 Male, age 80, both hemispheres 214.9
1977 Female, age 85, both hemispheres 210.0
2619 Male, age 74, both hemispheres 206.1
2729 Female, age 91, right hemisphere 204.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 223.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 223.8
Samples: 197

Max nTPM: 476.8
Min nTPM: 123.0
Std nTPM: 54.3
Median nTPM: 212.1
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 476.8
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 409.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 398.9
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 387.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 354.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 352.1
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 346.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 335.6
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 334.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 326.9
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 325.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 239.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 239.5
FF:10169-103B7 60 years, female 291.9
FF:10153-102I9 76 years, female 187.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 157.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 154.0
Samples: 4

Max nTPM: 199.2
Min nTPM: 126.9
Sample A Female 199.2
Sample B Female 132.0
Sample C Male 157.7
Sample D Male 126.9
Entorhinal cortex
nTPM: 157.1
Samples: 4

Max nTPM: 171.5
Min nTPM: 132.0
Sample A Female 154.0
Sample B Female 171.5
Sample C Male 170.9
Sample D Male 132.0
Subiculum
nTPM: 148.7
Samples: 4

Max nTPM: 196.4
Min nTPM: 126.5
Sample A Female 196.4
Sample B Female 132.8
Sample C Male 126.5
Sample D Male 139.1
Ventral hippocampus
nTPM: 135.8
Samples: 4

Max nTPM: 150.6
Min nTPM: 113.5
Sample A Female 150.6
Sample B Female 113.5
Sample C Male 141.0
Sample D Male 138.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 184.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 169.3
Samples: 4

Max nTPM: 181.8
Min nTPM: 162.4
Sample A Male 169.4
Sample B Male 163.5
Sample C Female 181.8
Sample D Female 162.4
Hippocampal formation
nTPM: 184.6
Samples: 4

Max nTPM: 200.7
Min nTPM: 171.0
Sample A Male 187.7
Sample B Male 171.0
Sample C Female 200.7
Sample D Female 178.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 17.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 17.2
69885624 Antisense, RP_050512_03_A07, Mouse strain C57BL/6J (56 days, male) 17.2

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