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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:31.2 nTPM
HPA:31.2 nTPM
GTEx:28.8 nTPM
FANTOM5:58.0 Scaled Tags Per Million
Pig:71.7 nTPM
Mouse:105.8 nTPM
Allen mouse:11.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA018666Antibody HPA018900
Glial cells LowMedium
Neuronal cells MediumMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 31.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 30.0
1857 Female, age 85, left hemisphere 32.3
2846 Female, age 79, unknown 31.7
2289 Male, age 61, right hemisphere 31.6
1781 Male, age 74, unknown 31.4
1854 Male, age 80, left hemisphere 31.1
2481 Female, age 94, left hemisphere 27.6
2290 Female, age 72, unknown 27.0
2288 Male, age 75, left hemisphere 26.8
Claustrum
nTPM: 28.7
2645 Female, age 72, unknown 33.8
2568 Male, age 61, both hemispheres 32.2
2196 Female, age 79, unknown 29.9
2198 Male, age 80, both hemispheres 28.6
2491 Male, age 75, both hemispheres 27.7
2284 Female, age 91, both hemispheres 27.2
2392 Female, age 94, both hemispheres 26.8
1956 Male, age 74, unknown 26.2
2292 Female, age 85, both hemispheres 26.2
Globus pallidus, externus
nTPM: 30.9
2646 Male, age 61, right hemisphere 35.9
2567 Female, age 72, unknown 31.6
2395 Male, age 75, both hemispheres 30.3
2772 Female, age 79, unknown 28.5
1996 Male, age 80, right hemisphere 28.3
Globus pallidus, internus
nTPM: 30.0
2483 Female, age 94, right hemisphere 33.3
2037 Male, age 80, right hemisphere 31.9
1818 Male, age 74, unknown 29.6
2111 Female, age 85, right hemisphere 29.6
2566 Female, age 72, unknown 28.7
2778 Female, age 91, both hemispheres 28.7
2287 Male, age 75, right hemisphere 28.1
Nucleus accumbens
nTPM: 29.6
1783 Male, age 74, unknown 32.6
1806 Female, age 85, left hemisphere 32.4
1856 Female, age 91, right hemisphere 30.6
2824 Male, age 61, right hemisphere 30.2
2732 Male, age 80, right hemisphere 28.7
2286 Male, age 75, left hemisphere 28.3
2698 Female, age 72, unknown 27.3
2391 Female, age 94, left hemisphere 26.9
Nucleus basalis of Meynert
nTPM: 31.2
2569 Male, age 61, both hemispheres 37.6
2821 Male, age 75, both hemispheres 29.2
2393 Male, age 80, right hemisphere 28.9
2484 Female, age 94, left hemisphere 28.9
Nucleus of the diagonal band
nTPM: 30.0
1979 Male, age 74, unknown 31.6
2195 Female, age 85, both hemispheres 31.4
2029 Male, age 61, right hemisphere 30.5
1812 Female, age 91, both hemispheres 28.9
2775 Male, age 80, right hemisphere 27.8
Olfactory tubercle
nTPM: 29.1
2856 Male, age 75, right hemisphere 30.8
1846 Male, age 80, right hemisphere 30.3
2487 Female, age 94, left hemisphere 28.1
1998 Female, age 91, both hemispheres 27.2
Putamen
nTPM: 31.2
2489 Female, age 72, unknown 34.2
2647 Male, age 75, left hemisphere 32.8
2466 Female, age 79, unknown 32.2
1838 Male, age 80, right hemisphere 31.2
1829 Male, age 74, unknown 30.5
2482 Female, age 94, left hemisphere 29.5
1937 Female, age 91, right hemisphere 28.0
Septal nuclei
nTPM: 30.8
2199 Male, age 80, right hemisphere 37.0
2059 Female, age 85, both hemispheres 32.3
2394 Male, age 61, left hemisphere 30.6
2031 Female, age 72, unknown 30.0
1960 Male, age 74, unknown 29.0
2009 Female, age 91, both hemispheres 28.8
2629 Female, age 94, right hemisphere 28.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 28.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 28.6
Samples: 246

Max nTPM: 45.9
Min nTPM: 17.9
Std nTPM: 3.9
Median nTPM: 28.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 45.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 42.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 41.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 41.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 39.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 39.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 39.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 38.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 38.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 37.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 36.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.8
Samples: 246

Max nTPM: 42.2
Min nTPM: 18.3
Std nTPM: 4.2
Median nTPM: 28.6
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 42.2
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 41.6
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 41.3
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 38.7
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 38.6
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 38.5
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 38.5
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 38.2
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 38.0
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 38.0
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 37.8
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Brain - Putamen (basal ganglia)
Average nTPM: 28.7
Samples: 205

Max nTPM: 40.2
Min nTPM: 16.3
Std nTPM: 3.6
Median nTPM: 28.7
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 40.2
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 39.4
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 39.2
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 38.1
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 37.2
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 37.0
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 36.8
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 36.2
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 36.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 36.0
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 35.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 56.5
FF:10164-103B2 76 years, female 56.5
Globus pallidus
Scaled Tags Per Million: 50.0
FF:10161-103A8 76 years, female 52.0
FF:10175-103C4 60 years, female 48.1
Nucleus accumbens
Scaled Tags Per Million: 55.2
FF:10037-101F1 23-56 years, mixed 55.2
Putamen
Scaled Tags Per Million: 58.0
FF:10176-103C5 60 years, female 58.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 71.7
Pig sample Sample description nTPM
Caudate
nTPM: 71.7
Samples: 4

Max nTPM: 94.2
Min nTPM: 57.0
Sample A Female 57.0
Sample B Female 70.5
Sample C Male 94.2
Sample D Male 65.0
Putamen
nTPM: 69.2
Samples: 4

Max nTPM: 90.0
Min nTPM: 45.3
Sample A Female 45.3
Sample B Female 63.0
Sample C Male 90.0
Sample D Male 78.6
Septum
nTPM: 61.4
Samples: 4

Max nTPM: 69.0
Min nTPM: 55.9
Sample A Female 62.6
Sample B Female 55.9
Sample C Male 69.0
Sample D Male 57.9
Ventral pallidum
nTPM: 58.7
Samples: 4

Max nTPM: 66.7
Min nTPM: 53.9
Sample A Female 57.8
Sample B Female 53.9
Sample C Male 66.7
Sample D Male 56.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 105.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 104.2
Samples: 4

Max nTPM: 109.6
Min nTPM: 96.2
Sample A Male 109.6
Sample B Male 105.7
Sample C Female 96.2
Sample D Female 105.1
Septum
nTPM: 105.8
Samples: 4

Max nTPM: 111.0
Min nTPM: 100.8
Sample A Male 101.6
Sample B Male 111.0
Sample C Female 100.8
Sample D Female 109.8
Ventral forebrain
nTPM: 100.0
Samples: 4

Max nTPM: 107.0
Min nTPM: 91.0
Sample A Male 91.0
Sample B Male 107.0
Sample C Female 101.0
Sample D Female 100.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 11.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 11.0
1952 Antisense, RP_040407_02_B01, Mouse strain C57BL/6J (56 days, male) 11.0
1953 Antisense, RP_040407_02_B01, Mouse strain C57BL/6J (56 days, male) 1.9
Pallidum
Expression energy: 10.6
1952 Antisense, RP_040407_02_B01, Mouse strain C57BL/6J (56 days, male) 10.6
1953 Antisense, RP_040407_02_B01, Mouse strain C57BL/6J (56 days, male) 2.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.