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WNT5A
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.9 nTPM
HPA:1.9 nTPM
GTEx:0.7 nTPM
FANTOM5:2.7 Scaled Tags Per Million
Pig:2.9 nTPM
Mouse:7.2 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 1.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.3
2481 Female, age 94, left hemisphere 0.7
1781 Male, age 74, unknown 0.4
1854 Male, age 80, left hemisphere 0.4
2846 Female, age 79, unknown 0.3
1857 Female, age 85, left hemisphere 0.2
2289 Male, age 61, right hemisphere 0.2
2288 Male, age 75, left hemisphere 0.0
2290 Female, age 72, unknown 0.0
Claustrum
nTPM: 1.2
2196 Female, age 79, unknown 1.8
2292 Female, age 85, both hemispheres 1.8
2568 Male, age 61, both hemispheres 1.7
2198 Male, age 80, both hemispheres 1.2
2284 Female, age 91, both hemispheres 1.1
2645 Female, age 72, unknown 1.0
2491 Male, age 75, both hemispheres 0.9
1956 Male, age 74, unknown 0.6
2392 Female, age 94, both hemispheres 0.4
Globus pallidus, externus
nTPM: 1.5
2395 Male, age 75, both hemispheres 3.4
2772 Female, age 79, unknown 2.0
1996 Male, age 80, right hemisphere 1.6
2567 Female, age 72, unknown 0.6
2646 Male, age 61, right hemisphere 0.0
Globus pallidus, internus
nTPM: 1.1
2566 Female, age 72, unknown 1.8
2037 Male, age 80, right hemisphere 1.7
2111 Female, age 85, right hemisphere 1.4
2778 Female, age 91, both hemispheres 1.2
2287 Male, age 75, right hemisphere 0.7
1818 Male, age 74, unknown 0.5
2483 Female, age 94, right hemisphere 0.3
Nucleus accumbens
nTPM: 0.2
2732 Male, age 80, right hemisphere 1.2
1856 Female, age 91, right hemisphere 0.5
2391 Female, age 94, left hemisphere 0.2
2698 Female, age 72, unknown 0.1
1783 Male, age 74, unknown 0.0
1806 Female, age 85, left hemisphere 0.0
2286 Male, age 75, left hemisphere 0.0
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.5
2821 Male, age 75, both hemispheres 1.1
2484 Female, age 94, left hemisphere 0.7
2393 Male, age 80, right hemisphere 0.3
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 1.7
1979 Male, age 74, unknown 2.8
2195 Female, age 85, both hemispheres 1.9
1812 Female, age 91, both hemispheres 1.6
2029 Male, age 61, right hemisphere 1.6
2775 Male, age 80, right hemisphere 0.8
Olfactory tubercle
nTPM: 1.1
2487 Female, age 94, left hemisphere 1.4
1846 Male, age 80, right hemisphere 1.3
1998 Female, age 91, both hemispheres 1.1
2856 Male, age 75, right hemisphere 0.4
Putamen
nTPM: 0.3
2482 Female, age 94, left hemisphere 1.0
2466 Female, age 79, unknown 0.5
1937 Female, age 91, right hemisphere 0.3
2489 Female, age 72, unknown 0.3
1829 Male, age 74, unknown 0.1
1838 Male, age 80, right hemisphere 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 1.9
1960 Male, age 74, unknown 2.9
2059 Female, age 85, both hemispheres 2.6
2199 Male, age 80, right hemisphere 1.9
2009 Female, age 91, both hemispheres 1.7
2629 Female, age 94, right hemisphere 1.6
2394 Male, age 61, left hemisphere 1.4
2031 Female, age 72, unknown 1.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 0.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.7
Samples: 246

Max nTPM: 2.6
Min nTPM: 0.2
Std nTPM: 0.3
Median nTPM: 0.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 2.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 2.3
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 2.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 2.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 2.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 1.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 1.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 1.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 1.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.7
Samples: 246

Max nTPM: 2.7
Min nTPM: 0.1
Std nTPM: 0.4
Median nTPM: 0.6
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 2.7
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 2.1
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 2.1
GTEX-1H1DG-0011-R6a-SM-A9SK8 70-79 years, male 1.9
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 1.8
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 1.8
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 1.7
GTEX-14PN4-0011-R6b-SM-69LQU 50-59 years, male 1.7
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 1.7
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 1.7
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 1.6
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Brain - Putamen (basal ganglia)
Average nTPM: 0.7
Samples: 205

Max nTPM: 3.5
Min nTPM: 0.1
Std nTPM: 0.3
Median nTPM: 0.6
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 3.5
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 2.0
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 1.9
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 1.8
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 1.7
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 1.7
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 1.6
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 1.6
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 1.5
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 1.5
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 1.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1.0
FF:10164-103B2 76 years, female 1.0
Globus pallidus
Scaled Tags Per Million: 2.7
FF:10161-103A8 76 years, female 3.0
FF:10175-103C4 60 years, female 2.3
Nucleus accumbens
Scaled Tags Per Million: 1.9
FF:10037-101F1 23-56 years, mixed 1.9
Putamen
Scaled Tags Per Million: 1.8
FF:10176-103C5 60 years, female 1.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 2.9
Pig sample Sample description nTPM
Caudate
nTPM: 1.5
Samples: 4

Max nTPM: 1.8
Min nTPM: 1.3
Sample A Female 1.8
Sample B Female 1.4
Sample C Male 1.3
Sample D Male 1.3
Putamen
nTPM: 1.5
Samples: 4

Max nTPM: 2.4
Min nTPM: 1.2
Sample A Female 2.4
Sample B Female 1.3
Sample C Male 1.2
Sample D Male 1.2
Septum
nTPM: 3.0
Samples: 4

Max nTPM: 3.8
Min nTPM: 2.0
Sample A Female 2.0
Sample B Female 2.2
Sample C Male 3.8
Sample D Male 3.8
Ventral pallidum
nTPM: 2.1
Samples: 4

Max nTPM: 3.9
Min nTPM: 1.3
Sample A Female 1.3
Sample B Female 1.7
Sample C Male 3.9
Sample D Male 1.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 7.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.1
Samples: 4

Max nTPM: 2.3
Min nTPM: 1.8
Sample A Male 2.2
Sample B Male 1.9
Sample C Female 2.3
Sample D Female 1.8
Septum
nTPM: 7.2
Samples: 4

Max nTPM: 8.0
Min nTPM: 5.5
Sample A Male 5.5
Sample B Male 8.0
Sample C Female 7.2
Sample D Female 8.0
Ventral forebrain
nTPM: 5.0
Samples: 4

Max nTPM: 5.5
Min nTPM: 4.5
Sample A Male 4.9
Sample B Male 5.0
Sample C Female 5.5
Sample D Female 4.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
79632266 Antisense, RP_071204_01_B05, Mouse strain C57BL/6J (56 days, male) 0.2
79556660 Antisense, RP_071204_01_B05, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.2
79632266 Antisense, RP_071204_01_B05, Mouse strain C57BL/6J (56 days, male) 0.2
79556660 Antisense, RP_071204_01_B05, Mouse strain C57BL/6J (56 days, male) 0.2

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.