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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.9 nTPM
HPA:14.9 nTPM
GTEx:20.1 nTPM
FANTOM5:48.5 Scaled Tags Per Million
Pig:7.7 nTPM
Mouse:10.2 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 14.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 11.9
2481 Female, age 94, left hemisphere 13.8
1781 Male, age 74, unknown 13.3
1857 Female, age 85, left hemisphere 12.9
2290 Female, age 72, unknown 12.1
1854 Male, age 80, left hemisphere 11.7
2288 Male, age 75, left hemisphere 11.6
2289 Male, age 61, right hemisphere 10.1
2846 Female, age 79, unknown 9.7
Claustrum
nTPM: 9.7
2198 Male, age 80, both hemispheres 10.7
2284 Female, age 91, both hemispheres 10.3
1956 Male, age 74, unknown 10.0
2292 Female, age 85, both hemispheres 10.0
2645 Female, age 72, unknown 9.7
2491 Male, age 75, both hemispheres 9.3
2196 Female, age 79, unknown 9.0
2392 Female, age 94, both hemispheres 9.0
2568 Male, age 61, both hemispheres 9.0
Globus pallidus, externus
nTPM: 12.6
1996 Male, age 80, right hemisphere 16.3
2646 Male, age 61, right hemisphere 13.7
2772 Female, age 79, unknown 12.8
2567 Female, age 72, unknown 10.5
2395 Male, age 75, both hemispheres 9.7
Globus pallidus, internus
nTPM: 12.3
2037 Male, age 80, right hemisphere 15.2
1818 Male, age 74, unknown 12.9
2483 Female, age 94, right hemisphere 12.5
2287 Male, age 75, right hemisphere 12.0
2778 Female, age 91, both hemispheres 11.7
2566 Female, age 72, unknown 11.3
2111 Female, age 85, right hemisphere 10.5
Nucleus accumbens
nTPM: 11.6
2732 Male, age 80, right hemisphere 15.9
1806 Female, age 85, left hemisphere 12.4
2286 Male, age 75, left hemisphere 11.6
2391 Female, age 94, left hemisphere 11.6
2698 Female, age 72, unknown 11.4
1856 Female, age 91, right hemisphere 11.3
1783 Male, age 74, unknown 10.6
2824 Male, age 61, right hemisphere 8.3
Nucleus basalis of Meynert
nTPM: 12.0
2569 Male, age 61, both hemispheres 16.5
2484 Female, age 94, left hemisphere 11.8
2393 Male, age 80, right hemisphere 10.2
2821 Male, age 75, both hemispheres 9.6
Nucleus of the diagonal band
nTPM: 13.8
1979 Male, age 74, unknown 19.1
1812 Female, age 91, both hemispheres 14.2
2195 Female, age 85, both hemispheres 14.0
2775 Male, age 80, right hemisphere 12.3
2029 Male, age 61, right hemisphere 9.1
Olfactory tubercle
nTPM: 11.1
2856 Male, age 75, right hemisphere 11.7
2487 Female, age 94, left hemisphere 11.5
1846 Male, age 80, right hemisphere 11.3
1998 Female, age 91, both hemispheres 10.0
Putamen
nTPM: 10.9
2482 Female, age 94, left hemisphere 12.0
1838 Male, age 80, right hemisphere 11.4
2489 Female, age 72, unknown 11.4
2647 Male, age 75, left hemisphere 11.2
1829 Male, age 74, unknown 11.1
2466 Female, age 79, unknown 9.7
1937 Female, age 91, right hemisphere 9.5
Septal nuclei
nTPM: 14.9
2199 Male, age 80, right hemisphere 19.6
2059 Female, age 85, both hemispheres 18.2
2009 Female, age 91, both hemispheres 16.2
2031 Female, age 72, unknown 13.2
2394 Male, age 61, left hemisphere 12.6
2629 Female, age 94, right hemisphere 12.6
1960 Male, age 74, unknown 12.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 20.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 20.1
Samples: 246

Max nTPM: 102.6
Min nTPM: 2.5
Std nTPM: 14.8
Median nTPM: 16.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 102.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 96.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 84.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 78.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 73.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 66.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 65.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 64.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 52.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 50.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 47.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 19.6
Samples: 246

Max nTPM: 104.6
Min nTPM: 4.2
Std nTPM: 13.8
Median nTPM: 15.1
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 104.6
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 85.3
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 73.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 62.9
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 58.0
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 57.6
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 52.4
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 51.2
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 50.4
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 47.4
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 46.4
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Brain - Putamen (basal ganglia)
Average nTPM: 19.6
Samples: 205

Max nTPM: 78.3
Min nTPM: 2.6
Std nTPM: 14.0
Median nTPM: 15.1
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 78.3
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 77.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 71.0
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 67.8
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 61.4
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 60.0
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 57.5
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 55.7
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 48.5
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 46.4
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 46.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 29.5
FF:10164-103B2 76 years, female 29.5
Globus pallidus
Scaled Tags Per Million: 38.6
FF:10175-103C4 60 years, female 42.6
FF:10161-103A8 76 years, female 34.6
Nucleus accumbens
Scaled Tags Per Million: 37.4
FF:10037-101F1 23-56 years, mixed 37.4
Putamen
Scaled Tags Per Million: 48.5
FF:10176-103C5 60 years, female 48.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 7.7
Pig sample Sample description nTPM
Caudate
nTPM: 5.6
Samples: 4

Max nTPM: 6.2
Min nTPM: 4.4
Sample A Female 6.1
Sample B Female 5.5
Sample C Male 6.2
Sample D Male 4.4
Putamen
nTPM: 6.2
Samples: 4

Max nTPM: 6.7
Min nTPM: 5.2
Sample A Female 6.1
Sample B Female 6.7
Sample C Male 6.6
Sample D Male 5.2
Septum
nTPM: 7.7
Samples: 4

Max nTPM: 11.5
Min nTPM: 5.7
Sample A Female 6.0
Sample B Female 7.7
Sample C Male 5.7
Sample D Male 11.5
Ventral pallidum
nTPM: 6.0
Samples: 4

Max nTPM: 7.7
Min nTPM: 4.2
Sample A Female 7.7
Sample B Female 6.6
Sample C Male 5.4
Sample D Male 4.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 10.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 4.8
Samples: 4

Max nTPM: 5.7
Min nTPM: 3.8
Sample A Male 5.7
Sample B Male 3.8
Sample C Female 5.5
Sample D Female 4.2
Septum
nTPM: 10.2
Samples: 4

Max nTPM: 12.1
Min nTPM: 6.6
Sample A Male 11.1
Sample B Male 10.9
Sample C Female 12.1
Sample D Female 6.6
Ventral forebrain
nTPM: 6.8
Samples: 4

Max nTPM: 8.5
Min nTPM: 5.1
Sample A Male 8.4
Sample B Male 5.1
Sample C Female 8.5
Sample D Female 5.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
100142550 Antisense, RP_110519_03_D06, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.1
100142550 Antisense, RP_110519_03_D06, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.