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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:54.1 nTPM
HPA:54.1 nTPM
GTEx:48.2 nTPM
FANTOM5:49.2 Scaled Tags Per Million
Mouse:98.4 nTPM
Allen mouse:1.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 54.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 49.7
2846 Female, age 79, unknown 51.1
2481 Female, age 94, left hemisphere 50.7
1781 Male, age 74, unknown 50.5
1857 Female, age 85, left hemisphere 50.1
2288 Male, age 75, left hemisphere 49.1
2290 Female, age 72, unknown 49.0
1854 Male, age 80, left hemisphere 48.9
2289 Male, age 61, right hemisphere 48.0
Claustrum
nTPM: 51.3
2198 Male, age 80, both hemispheres 53.4
2568 Male, age 61, both hemispheres 53.4
2284 Female, age 91, both hemispheres 53.2
2645 Female, age 72, unknown 52.9
2491 Male, age 75, both hemispheres 51.9
1956 Male, age 74, unknown 50.8
2196 Female, age 79, unknown 49.6
2392 Female, age 94, both hemispheres 49.6
2292 Female, age 85, both hemispheres 47.3
Globus pallidus, externus
nTPM: 49.2
2772 Female, age 79, unknown 53.4
2395 Male, age 75, both hemispheres 49.0
1996 Male, age 80, right hemisphere 48.3
2567 Female, age 72, unknown 47.6
2646 Male, age 61, right hemisphere 47.5
Globus pallidus, internus
nTPM: 48.3
2483 Female, age 94, right hemisphere 52.0
2287 Male, age 75, right hemisphere 49.9
1818 Male, age 74, unknown 49.7
2037 Male, age 80, right hemisphere 47.4
2566 Female, age 72, unknown 47.3
2778 Female, age 91, both hemispheres 46.7
2111 Female, age 85, right hemisphere 45.0
Nucleus accumbens
nTPM: 49.4
1856 Female, age 91, right hemisphere 52.5
2286 Male, age 75, left hemisphere 50.5
2824 Male, age 61, right hemisphere 50.1
1783 Male, age 74, unknown 49.7
1806 Female, age 85, left hemisphere 49.6
2698 Female, age 72, unknown 47.8
2732 Male, age 80, right hemisphere 47.4
2391 Female, age 94, left hemisphere 47.3
Nucleus basalis of Meynert
nTPM: 48.4
2484 Female, age 94, left hemisphere 48.6
2569 Male, age 61, both hemispheres 48.6
2821 Male, age 75, both hemispheres 48.5
2393 Male, age 80, right hemisphere 47.7
Nucleus of the diagonal band
nTPM: 54.1
2775 Male, age 80, right hemisphere 57.8
1812 Female, age 91, both hemispheres 55.3
2029 Male, age 61, right hemisphere 54.3
2195 Female, age 85, both hemispheres 53.4
1979 Male, age 74, unknown 49.9
Olfactory tubercle
nTPM: 53.6
1998 Female, age 91, both hemispheres 55.3
1846 Male, age 80, right hemisphere 54.9
2487 Female, age 94, left hemisphere 52.4
2856 Male, age 75, right hemisphere 51.6
Putamen
nTPM: 49.3
2647 Male, age 75, left hemisphere 53.0
2466 Female, age 79, unknown 50.4
2482 Female, age 94, left hemisphere 49.9
1838 Male, age 80, right hemisphere 49.3
1937 Female, age 91, right hemisphere 48.9
2489 Female, age 72, unknown 47.2
1829 Male, age 74, unknown 46.3
Septal nuclei
nTPM: 51.8
1960 Male, age 74, unknown 56.3
2031 Female, age 72, unknown 54.0
2629 Female, age 94, right hemisphere 52.7
2009 Female, age 91, both hemispheres 51.4
2059 Female, age 85, both hemispheres 49.8
2394 Male, age 61, left hemisphere 49.4
2199 Male, age 80, right hemisphere 48.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 48.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 43.9
Samples: 246

Max nTPM: 78.5
Min nTPM: 25.8
Std nTPM: 8.8
Median nTPM: 42.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 78.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 78.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 76.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 72.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 70.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 68.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 67.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 63.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 61.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 60.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 60.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 48.2
Samples: 246

Max nTPM: 71.0
Min nTPM: 25.2
Std nTPM: 8.4
Median nTPM: 48.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 71.0
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 70.9
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 68.6
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 68.1
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 67.9
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 67.7
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 66.8
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 66.7
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 65.2
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 65.1
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 64.1
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Brain - Putamen (basal ganglia)
Average nTPM: 45.7
Samples: 205

Max nTPM: 72.5
Min nTPM: 28.3
Std nTPM: 8.2
Median nTPM: 45.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 72.5
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 72.0
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 66.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 64.9
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 64.8
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 64.5
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 64.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 63.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 63.3
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 62.8
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 62.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 32.0
FF:10164-103B2 76 years, female 32.0
Globus pallidus
Scaled Tags Per Million: 25.5
FF:10161-103A8 76 years, female 25.8
FF:10175-103C4 60 years, female 25.2
Nucleus accumbens
Scaled Tags Per Million: 49.2
FF:10037-101F1 23-56 years, mixed 49.2
Putamen
Scaled Tags Per Million: 43.2
FF:10176-103C5 60 years, female 43.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 98.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 88.1
Samples: 4

Max nTPM: 96.1
Min nTPM: 81.4
Sample A Male 83.8
Sample B Male 81.4
Sample C Female 91.0
Sample D Female 96.1
Septum
nTPM: 91.8
Samples: 4

Max nTPM: 99.2
Min nTPM: 82.8
Sample A Male 92.5
Sample B Male 99.2
Sample C Female 92.6
Sample D Female 82.8
Ventral forebrain
nTPM: 98.4
Samples: 4

Max nTPM: 113.0
Min nTPM: 92.9
Sample A Male 93.3
Sample B Male 94.5
Sample C Female 113.0
Sample D Female 92.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.2
71280727 Antisense, RP_050818_01_E03, Mouse strain C57BL/6J (56 days, male) 1.2
Pallidum
Expression energy: 1.1
71280727 Antisense, RP_050818_01_E03, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.