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RRP9
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.0 nTPM
HPA:10.0 nTPM
GTEx:9.5 nTPM
FANTOM5:15.9 Scaled Tags Per Million
Pig:7.1 nTPM
Mouse:7.5 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 10.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.6
2019 Male, age 18, unknown 10.7
2586 Male, age 75, left hemisphere 10.4
2411 Female, age 72, unknown 9.9
2828 Female, age 72, unknown 9.9
1827 Male, age 72, unknown 9.8
2666 Male, age 74, left hemisphere 9.6
1870 Female, age 42, unknown 9.2
1833 Male, age 53, unknown 9.0
1830 Male, age 51, unknown 8.9
2219 Male, age 76, both hemispheres 8.2
Dorsal raphe nucleus
nTPM: 8.8
2298 Female, age 72, unknown 9.7
2750 Male, age 76, both hemispheres 9.1
1828 Male, age 53, unknown 8.9
2047 Male, age 72, unknown 8.6
2016 Female, age 72, unknown 7.8
Inferior colliculus
nTPM: 8.9
1890 Male, age 53, unknown 9.2
1848 Female, age 42, unknown 9.1
2097 Female, age 72, unknown 9.1
2849 Male, age 72, unknown 8.3
Median raphe nucleus
nTPM: 8.7
2220 Male, age 76, midline 8.7
Pedunculopontine tegmental nucleus
nTPM: 8.7
1921 Female, age 85, both hemispheres 9.5
2334 Male, age 80, both hemispheres 8.4
2338 Male, age 61, both hemispheres 8.3
Periaquaductal grey, anterior
nTPM: 9.4
2502 Female, age 75, unknown 9.9
1947 Male, age 18, unknown 9.2
1795 Male, age 51, unknown 9.1
Periaquaductal grey, dorsal
nTPM: 8.6
1831 Male, age 72, unknown 9.0
2464 Female, age 72, unknown 8.8
1840 Male, age 53, unknown 8.4
2850 Male, age 76, both hemispheres 8.2
Periaquaductal grey, lateral
nTPM: 8.7
2272 Male, age 74, both hemispheres 9.0
2053 Male, age 18, unknown 8.7
2140 Male, age 76, both hemispheres 8.3
Pretectal area
nTPM: 10.0
1944 Female, age 72, unknown 11.4
1816 Male, age 51, unknown 11.3
2007 Male, age 72, unknown 11.1
1817 Female, age 42, unknown 10.7
2667 Female, age 75, unknown 10.4
1815 Male, age 53, unknown 10.3
2316 Male, age 76, right hemisphere 9.2
2273 Male, age 74, both hemispheres 9.0
2407 Male, age 75, both hemispheres 9.0
2224 Female, age 72, unknown 8.9
2825 Male, age 18, unknown 8.3
Red nucleus
nTPM: 9.9
2785 Male, age 18, unknown 11.1
1904 Male, age 53, unknown 10.2
2588 Male, age 74, left hemisphere 10.1
2769 Male, age 72, unknown 10.0
2823 Male, age 76, right hemisphere 10.0
1865 Male, age 51, unknown 9.9
1821 Female, age 72, unknown 9.7
1954 Female, age 42, unknown 9.7
2503 Female, age 72, unknown 9.7
2584 Male, age 75, left hemisphere 9.6
2227 Male, age 72, unknown 9.3
2725 Female, age 75, unknown 9.2
Substantia nigra
nTPM: 8.8
1889 Female, age 72, unknown 10.0
2583 Male, age 75, right hemisphere 9.8
1851 Male, age 51, unknown 9.1
2665 Male, age 74, both hemispheres 8.8
1916 Female, age 42, unknown 8.7
2590 Female, age 75, unknown 8.6
1941 Male, age 53, unknown 8.5
2699 Male, age 18, unknown 8.2
2409 Female, age 72, unknown 8.1
2241 Male, age 72, unknown 7.8
Superior colliculus
nTPM: 9.7
1995 Male, age 72, unknown 10.4
1913 Female, age 42, unknown 10.3
2261 Male, age 18, unknown 10.1
1796 Male, age 53, unknown 10.0
2087 Female, age 72, unknown 9.9
1895 Male, age 76, right hemisphere 9.8
2668 Female, age 75, unknown 9.5
2587 Male, age 74, left hemisphere 9.3
1839 Male, age 51, unknown 9.2
2664 Male, age 75, both hemispheres 8.7
Ventral tegmental area
nTPM: 8.8
2410 Female, age 72, unknown 9.2
1915 Female, age 42, unknown 8.9
2218 Male, age 76, both hemispheres 8.9
2223 Female, age 72, unknown 8.9
1942 Male, age 51, unknown 8.6
2021 Male, age 53, unknown 8.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.5
Samples: 139

Max nTPM: 17.6
Min nTPM: 4.6
Std nTPM: 2.0
Median nTPM: 9.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 17.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 15.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 14.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 14.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 14.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 14.1
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 13.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 13.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 13.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 13.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 12.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.9
FF:10158-103A5 76 years, female 15.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.1
Pig sample Sample description nTPM
Midbrain
nTPM: 7.1
Samples: 4

Max nTPM: 9.2
Min nTPM: 5.4
Sample A Female 7.7
Sample B Female 5.4
Sample C Male 9.2
Sample D Male 6.0
Periaqueductal gray
nTPM: 4.8
Samples: 3

Max nTPM: 5.4
Min nTPM: 4.1
Sample B Female 4.9
Sample C Male 5.4
Sample D Male 4.1
Substantia nigra
nTPM: 5.9
Samples: 4

Max nTPM: 6.6
Min nTPM: 5.5
Sample A Female 6.6
Sample B Female 5.5
Sample C Male 6.1
Sample D Male 5.5
Superior colliculi
nTPM: 6.5
Samples: 4

Max nTPM: 7.5
Min nTPM: 5.6
Sample A Female 7.1
Sample B Female 5.6
Sample C Male 7.5
Sample D Male 5.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.5
Samples: 4

Max nTPM: 8.8
Min nTPM: 6.5
Sample A Male 8.8
Sample B Male 6.6
Sample C Female 6.5
Sample D Female 7.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
69015799 Antisense, RP_050315_01_G02, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.