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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:16.3 nTPM
HPA:16.3 nTPM
GTEx:21.6 nTPM
FANTOM5:29.9 Scaled Tags Per Million
Pig:2.8 nTPM
Mouse:5.8 nTPM
Allen mouse:1.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA012410
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 16.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 16.3
2290 Female, age 72, unknown 27.9
2289 Male, age 61, right hemisphere 24.1
1854 Male, age 80, left hemisphere 18.3
1857 Female, age 85, left hemisphere 17.4
2846 Female, age 79, unknown 16.2
2288 Male, age 75, left hemisphere 11.3
1781 Male, age 74, unknown 8.5
2481 Female, age 94, left hemisphere 6.8
Claustrum
nTPM: 1.5
2196 Female, age 79, unknown 6.0
2568 Male, age 61, both hemispheres 2.8
2284 Female, age 91, both hemispheres 1.4
2392 Female, age 94, both hemispheres 1.4
2198 Male, age 80, both hemispheres 0.6
2491 Male, age 75, both hemispheres 0.5
1956 Male, age 74, unknown 0.4
2645 Female, age 72, unknown 0.3
2292 Female, age 85, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.8
2646 Male, age 61, right hemisphere 3.0
2395 Male, age 75, both hemispheres 0.8
2567 Female, age 72, unknown 0.5
1996 Male, age 80, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.5
2483 Female, age 94, right hemisphere 3.7
2566 Female, age 72, unknown 0.4
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 16.0
2824 Male, age 61, right hemisphere 25.8
1783 Male, age 74, unknown 19.6
1806 Female, age 85, left hemisphere 19.5
1856 Female, age 91, right hemisphere 18.9
2698 Female, age 72, unknown 17.5
2286 Male, age 75, left hemisphere 11.7
2732 Male, age 80, right hemisphere 7.9
2391 Female, age 94, left hemisphere 7.4
Nucleus basalis of Meynert
nTPM: 10.4
2484 Female, age 94, left hemisphere 17.3
2393 Male, age 80, right hemisphere 12.1
2821 Male, age 75, both hemispheres 7.6
2569 Male, age 61, both hemispheres 4.7
Nucleus of the diagonal band
nTPM: 3.4
1979 Male, age 74, unknown 13.4
1812 Female, age 91, both hemispheres 1.6
2775 Male, age 80, right hemisphere 0.8
2029 Male, age 61, right hemisphere 0.6
2195 Female, age 85, both hemispheres 0.5
Olfactory tubercle
nTPM: 0.6
2487 Female, age 94, left hemisphere 1.2
1998 Female, age 91, both hemispheres 0.4
2856 Male, age 75, right hemisphere 0.4
1846 Male, age 80, right hemisphere 0.3
Putamen
nTPM: 16.3
2489 Female, age 72, unknown 25.7
1838 Male, age 80, right hemisphere 19.6
2466 Female, age 79, unknown 19.1
1829 Male, age 74, unknown 15.5
1937 Female, age 91, right hemisphere 14.9
2482 Female, age 94, left hemisphere 11.1
2647 Male, age 75, left hemisphere 8.0
Septal nuclei
nTPM: 2.4
2199 Male, age 80, right hemisphere 8.1
2394 Male, age 61, left hemisphere 3.5
2059 Female, age 85, both hemispheres 2.7
2009 Female, age 91, both hemispheres 1.0
2031 Female, age 72, unknown 0.6
2629 Female, age 94, right hemisphere 0.6
1960 Male, age 74, unknown 0.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 21.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 14.6
Samples: 246

Max nTPM: 43.3
Min nTPM: 0.3
Std nTPM: 8.5
Median nTPM: 13.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 43.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 40.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 34.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 33.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 33.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 32.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 32.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 32.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 32.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 32.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 31.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 21.6
Samples: 246

Max nTPM: 55.5
Min nTPM: 0.1
Std nTPM: 11.3
Median nTPM: 22.1
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 55.5
GTEX-13S7M-0011-R6b-SM-5O9D8 60-69 years, female 49.0
GTEX-1H3NZ-0011-R6b-SM-A9G1N 60-69 years, male 45.8
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 45.4
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 43.1
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 42.9
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 41.5
GTEX-1HBPI-0011-R6b-SM-A9G1T 50-59 years, male 41.2
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 41.1
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 41.0
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 40.7
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Brain - Putamen (basal ganglia)
Average nTPM: 13.3
Samples: 205

Max nTPM: 36.8
Min nTPM: 0.2
Std nTPM: 7.3
Median nTPM: 13.0
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 36.8
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 32.9
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 32.8
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 29.4
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 29.4
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 28.7
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 28.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 26.8
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 26.4
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 25.2
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 25.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 21.0
FF:10164-103B2 76 years, female 21.0
Globus pallidus
Scaled Tags Per Million: 5.5
FF:10175-103C4 60 years, female 8.6
FF:10161-103A8 76 years, female 2.3
Nucleus accumbens
Scaled Tags Per Million: 13.4
FF:10037-101F1 23-56 years, mixed 13.4
Putamen
Scaled Tags Per Million: 29.9
FF:10176-103C5 60 years, female 29.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 2.8
Pig sample Sample description nTPM
Caudate
nTPM: 2.1
Samples: 4

Max nTPM: 3.5
Min nTPM: 0.9
Sample A Female 3.5
Sample B Female 2.6
Sample C Male 1.5
Sample D Male 0.9
Putamen
nTPM: 1.1
Samples: 4

Max nTPM: 1.9
Min nTPM: 0.3
Sample A Female 1.9
Sample B Female 0.9
Sample C Male 0.3
Sample D Male 1.1
Septum
nTPM: 1.5
Samples: 4

Max nTPM: 2.7
Min nTPM: 0.4
Sample A Female 2.1
Sample B Female 2.7
Sample C Male 0.7
Sample D Male 0.4
Ventral pallidum
nTPM: 2.8
Samples: 4

Max nTPM: 5.5
Min nTPM: 1.5
Sample A Female 1.9
Sample B Female 5.5
Sample C Male 1.5
Sample D Male 2.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 5.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.8
Samples: 4

Max nTPM: 2.0
Min nTPM: 1.4
Sample A Male 1.8
Sample B Male 2.0
Sample C Female 1.4
Sample D Female 1.8
Septum
nTPM: 1.1
Samples: 4

Max nTPM: 1.8
Min nTPM: 0.5
Sample A Male 1.8
Sample B Male 0.5
Sample C Female 0.8
Sample D Female 1.1
Ventral forebrain
nTPM: 5.8
Samples: 4

Max nTPM: 7.9
Min nTPM: 3.5
Sample A Male 6.5
Sample B Male 7.9
Sample C Female 5.4
Sample D Female 3.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.6
73788043 Antisense, RP_051213_01_A08, Mouse strain C57BL/6J (56 days, male) 2.7
69782605 Antisense, RP_050505_03_D04, Mouse strain C57BL/6J (56 days, male) 1.7
73788044 Sense, RPS_051213_02_A08, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 1.0
69782605 Antisense, RP_050505_03_D04, Mouse strain C57BL/6J (56 days, male) 1.4
73788043 Antisense, RP_051213_01_A08, Mouse strain C57BL/6J (56 days, male) 1.3
73788044 Sense, RPS_051213_02_A08, Mouse strain C57BL/6J (56 days, male) 0.4

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.