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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:411.8 nTPM
HPA:411.8 nTPM
GTEx:362.4 nTPM
FANTOM5:666.8 Scaled Tags Per Million
Pig:486.8 nTPM
Mouse:511.7 nTPM
Allen mouse:19.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA023977Antibody CAB005388
Glial cells LowMedium
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 411.8
Sample id Sample description nTPM
Hippocampus
nTPM: 352.7
1898 Male, age 80, left hemisphere 394.8
2621 Female, age 67, right hemisphere 378.5
1855 Male, age 76, left hemisphere 356.9
2529 Female, age 94, left hemisphere 351.4
1911 Female, age 85, right hemisphere 322.8
2148 Female, age 91, left hemisphere 311.8
Dentate gyrus
nTPM: 363.7
2530 Female, age 94, left hemisphere 431.4
2010 Male, age 76, both hemispheres 386.8
1927 Female, age 91, both hemispheres 356.8
2246 Female, age 85, both hemispheres 338.2
2531 Female, age 67, both hemispheres 335.5
2528 Male, age 74, both hemispheres 333.5
Entorhinal gyrus
nTPM: 379.6
2764 Male, age 80, right hemisphere 419.5
1938 Female, age 85, left hemisphere 391.8
1787 Male, age 76, left hemisphere 379.6
2613 Female, age 94, left hemisphere 377.2
2686 Male, age 75, right hemisphere 360.5
2117 Female, age 91, right hemisphere 349.2
Hippocampus, CA1
nTPM: 359.5
2749 Male, age 80, left hemisphere 433.5
2045 Male, age 76, both hemispheres 375.2
1873 Female, age 85, both hemispheres 358.5
2527 Male, age 74, both hemispheres 326.1
2082 Female, age 91, right hemisphere 304.2
Hippocampus, CA2
nTPM: 365.9
1892 Male, age 76, both hemispheres 419.1
1963 Male, age 80, left hemisphere 389.5
1940 Female, age 85, left hemisphere 364.1
2437 Female, age 94, left hemisphere 353.8
2249 Male, age 74, both hemispheres 349.1
2113 Female, age 91, right hemisphere 319.8
Hippocampus, CA3
nTPM: 351.0
1867 Male, age 76, both hemispheres 405.7
2137 Male, age 80, left hemisphere 359.3
2620 Female, age 94, left hemisphere 359.1
1891 Female, age 85, both hemispheres 351.7
2861 Female, age 67, both hemispheres 323.9
2436 Male, age 74, both hemispheres 306.1
Parahippocampal cortex
nTPM: 368.0
1850 Male, age 80, both hemispheres 451.4
1933 Female, age 85, both hemispheres 389.6
2018 Male, age 76, both hemispheres 385.8
2532 Female, age 72, left hemisphere 384.7
1990 Female, age 91, right hemisphere 375.2
2245 Female, age 91, both hemispheres 351.8
2692 Male, age 74, both hemispheres 350.5
2693 Female, age 94, both hemispheres 341.9
2250 Female, age 67, right hemisphere 330.8
2622 Female, age 67, right hemisphere 318.5
Perirhinal gyrus
nTPM: 411.8
1841 Female, age 85, right hemisphere 434.3
1794 Male, age 80, right hemisphere 433.3
1847 Female, age 91, left hemisphere 431.7
2848 Male, age 76, right hemisphere 384.6
2521 Female, age 94, right hemisphere 374.9
Subiculum
nTPM: 353.8
1901 Male, age 80, both hemispheres 384.7
1977 Female, age 85, both hemispheres 382.7
2042 Male, age 76, both hemispheres 353.6
2438 Female, age 94, left hemisphere 347.3
2619 Male, age 74, both hemispheres 343.4
2729 Female, age 91, right hemisphere 311.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 362.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 362.4
Samples: 197

Max nTPM: 861.5
Min nTPM: 124.4
Std nTPM: 97.3
Median nTPM: 347.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 861.5
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 695.9
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 611.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 606.4
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 583.1
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 576.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 567.1
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 563.6
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 535.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 529.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 523.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 666.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 666.8
FF:10169-103B7 60 years, female 740.8
FF:10153-102I9 76 years, female 592.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 486.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 486.8
Samples: 4

Max nTPM: 651.0
Min nTPM: 359.1
Sample A Female 651.0
Sample B Female 491.2
Sample C Male 445.9
Sample D Male 359.1
Entorhinal cortex
nTPM: 373.9
Samples: 4

Max nTPM: 426.4
Min nTPM: 309.9
Sample A Female 410.4
Sample B Female 426.4
Sample C Male 348.9
Sample D Male 309.9
Subiculum
nTPM: 421.6
Samples: 4

Max nTPM: 515.9
Min nTPM: 371.5
Sample A Female 515.9
Sample B Female 391.0
Sample C Male 371.5
Sample D Male 408.0
Ventral hippocampus
nTPM: 403.5
Samples: 4

Max nTPM: 511.2
Min nTPM: 295.5
Sample A Female 511.2
Sample B Female 295.5
Sample C Male 358.0
Sample D Male 449.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 511.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 511.7
Samples: 4

Max nTPM: 591.0
Min nTPM: 437.3
Sample A Male 511.9
Sample B Male 591.0
Sample C Female 437.3
Sample D Female 506.5
Hippocampal formation
nTPM: 443.6
Samples: 4

Max nTPM: 497.1
Min nTPM: 383.3
Sample A Male 457.2
Sample B Male 436.8
Sample C Female 497.1
Sample D Female 383.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 19.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 19.7
68162204 Antisense, RP_041122_01_G02, Mouse strain C57BL/6J (56 days, male) 20.2
70805906 Antisense, RP_050725_02_E03, Mouse strain C57BL/6J (56 days, male) 19.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.