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CCDC88A
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:48.8 nTPM
HPA:48.8 nTPM
GTEx:49.7 nTPM
FANTOM5:48.6 Scaled Tags Per Million
Pig:69.2 nTPM
Mouse:21.6 nTPM
Allen mouse:4.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA038101Antibody HPA038102
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 48.8
Sample id Sample description nTPM
Hippocampus
nTPM: 44.6
2529 Female, age 94, left hemisphere 47.4
1911 Female, age 85, right hemisphere 47.0
1898 Male, age 80, left hemisphere 45.6
1855 Male, age 76, left hemisphere 42.9
2148 Female, age 91, left hemisphere 42.5
2621 Female, age 67, right hemisphere 42.0
Dentate gyrus
nTPM: 41.8
2530 Female, age 94, left hemisphere 43.6
2528 Male, age 74, both hemispheres 43.2
2010 Male, age 76, both hemispheres 41.7
2246 Female, age 85, both hemispheres 41.3
1927 Female, age 91, both hemispheres 40.8
2531 Female, age 67, both hemispheres 40.0
Entorhinal gyrus
nTPM: 46.9
2117 Female, age 91, right hemisphere 52.1
2613 Female, age 94, left hemisphere 49.3
2686 Male, age 75, right hemisphere 48.6
1938 Female, age 85, left hemisphere 47.0
2764 Male, age 80, right hemisphere 43.4
1787 Male, age 76, left hemisphere 41.1
Hippocampus, CA1
nTPM: 42.6
1873 Female, age 85, both hemispheres 46.6
2749 Male, age 80, left hemisphere 45.3
2527 Male, age 74, both hemispheres 42.3
2082 Female, age 91, right hemisphere 39.7
2045 Male, age 76, both hemispheres 39.2
Hippocampus, CA2
nTPM: 44.5
2249 Male, age 74, both hemispheres 46.7
1963 Male, age 80, left hemisphere 46.0
1940 Female, age 85, left hemisphere 44.0
1892 Male, age 76, both hemispheres 43.8
2113 Female, age 91, right hemisphere 43.3
2437 Female, age 94, left hemisphere 43.0
Hippocampus, CA3
nTPM: 42.6
1891 Female, age 85, both hemispheres 51.3
1867 Male, age 76, both hemispheres 46.4
2137 Male, age 80, left hemisphere 44.6
2861 Female, age 67, both hemispheres 39.7
2436 Male, age 74, both hemispheres 37.5
2620 Female, age 94, left hemisphere 36.2
Parahippocampal cortex
nTPM: 45.3
2692 Male, age 74, both hemispheres 52.2
1933 Female, age 85, both hemispheres 46.7
2532 Female, age 72, left hemisphere 45.9
1850 Male, age 80, both hemispheres 45.4
1990 Female, age 91, right hemisphere 45.2
2622 Female, age 67, right hemisphere 44.5
2250 Female, age 67, right hemisphere 43.9
2693 Female, age 94, both hemispheres 43.2
2018 Male, age 76, both hemispheres 43.0
2245 Female, age 91, both hemispheres 42.5
Perirhinal gyrus
nTPM: 43.0
1841 Female, age 85, right hemisphere 45.2
1794 Male, age 80, right hemisphere 43.8
2521 Female, age 94, right hemisphere 42.9
1847 Female, age 91, left hemisphere 41.7
2848 Male, age 76, right hemisphere 41.5
Subiculum
nTPM: 48.8
2042 Male, age 76, both hemispheres 52.3
1901 Male, age 80, both hemispheres 52.2
2438 Female, age 94, left hemisphere 49.0
1977 Female, age 85, both hemispheres 48.2
2619 Male, age 74, both hemispheres 47.4
2729 Female, age 91, right hemisphere 43.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 49.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 49.7
Samples: 197

Max nTPM: 134.4
Min nTPM: 18.6
Std nTPM: 18.1
Median nTPM: 46.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 134.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 113.1
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 109.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 100.5
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 95.6
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 92.9
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 90.3
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 90.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 88.7
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 88.5
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 85.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 48.6
FF:10153-102I9 76 years, female 61.7
FF:10169-103B7 60 years, female 35.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 69.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 69.2
Samples: 4

Max nTPM: 78.4
Min nTPM: 61.8
Sample A Female 71.6
Sample B Female 65.0
Sample C Male 78.4
Sample D Male 61.8
Entorhinal cortex
nTPM: 58.3
Samples: 4

Max nTPM: 61.7
Min nTPM: 54.6
Sample A Female 54.6
Sample B Female 61.7
Sample C Male 58.2
Sample D Male 58.7
Subiculum
nTPM: 62.1
Samples: 4

Max nTPM: 66.4
Min nTPM: 59.7
Sample A Female 62.0
Sample B Female 60.4
Sample C Male 59.7
Sample D Male 66.4
Ventral hippocampus
nTPM: 61.1
Samples: 4

Max nTPM: 70.7
Min nTPM: 42.0
Sample A Female 70.7
Sample B Female 66.7
Sample C Male 42.0
Sample D Male 64.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 21.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 21.6
Samples: 4

Max nTPM: 22.3
Min nTPM: 20.6
Sample A Male 22.3
Sample B Male 21.8
Sample C Female 20.6
Sample D Female 21.6
Hippocampal formation
nTPM: 20.1
Samples: 4

Max nTPM: 21.8
Min nTPM: 17.5
Sample A Male 20.1
Sample B Male 21.8
Sample C Female 21.1
Sample D Female 17.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.2
70231893 Antisense, RP_050526_02_C01, Mouse strain C57BL/6J (56 days, male) 6.3
73635978 Antisense, RP_051101_03_C11, Mouse strain C57BL/6J (56 days, male) 4.2
71723845 Antisense, RP_050921_01_A06, Mouse strain C57BL/6J (56 days, male) 2.1

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.