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CCDC88A
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:60.8 nTPM
HPA:60.8 nTPM
GTEx:48.4 nTPM
FANTOM5:77.6 Scaled Tags Per Million
Pig:83.5 nTPM
Mouse:20.9 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 60.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.9
1830 Male, age 51, unknown 59.8
1870 Female, age 42, unknown 58.5
2019 Male, age 18, unknown 56.2
1833 Male, age 53, unknown 54.8
2586 Male, age 75, left hemisphere 54.8
2411 Female, age 72, unknown 54.1
1827 Male, age 72, unknown 53.2
2828 Female, age 72, unknown 51.4
2219 Male, age 76, both hemispheres 48.3
2666 Male, age 74, left hemisphere 48.1
Dorsal raphe nucleus
nTPM: 48.4
2750 Male, age 76, both hemispheres 55.4
2016 Female, age 72, unknown 51.8
1828 Male, age 53, unknown 49.7
2047 Male, age 72, unknown 45.5
2298 Female, age 72, unknown 39.9
Inferior colliculus
nTPM: 49.5
1848 Female, age 42, unknown 55.0
2849 Male, age 72, unknown 50.1
1890 Male, age 53, unknown 47.8
2097 Female, age 72, unknown 45.2
Median raphe nucleus
nTPM: 44.6
2220 Male, age 76, midline 44.6
Pedunculopontine tegmental nucleus
nTPM: 51.1
2338 Male, age 61, both hemispheres 56.3
1921 Female, age 85, both hemispheres 48.6
2334 Male, age 80, both hemispheres 48.3
Periaquaductal grey, anterior
nTPM: 46.1
2502 Female, age 75, unknown 47.9
1947 Male, age 18, unknown 47.0
1795 Male, age 51, unknown 43.4
Periaquaductal grey, dorsal
nTPM: 48.1
1840 Male, age 53, unknown 50.4
2464 Female, age 72, unknown 48.6
1831 Male, age 72, unknown 48.3
2850 Male, age 76, both hemispheres 44.9
Periaquaductal grey, lateral
nTPM: 44.8
2053 Male, age 18, unknown 46.6
2140 Male, age 76, both hemispheres 46.2
2272 Male, age 74, both hemispheres 41.7
Pretectal area
nTPM: 49.0
2316 Male, age 76, right hemisphere 53.2
1815 Male, age 53, unknown 52.6
1817 Female, age 42, unknown 52.5
2407 Male, age 75, both hemispheres 52.3
2007 Male, age 72, unknown 49.8
2667 Female, age 75, unknown 49.6
1944 Female, age 72, unknown 48.6
2825 Male, age 18, unknown 48.2
2224 Female, age 72, unknown 45.3
1816 Male, age 51, unknown 44.6
2273 Male, age 74, both hemispheres 42.5
Red nucleus
nTPM: 60.8
2503 Female, age 72, unknown 67.0
1865 Male, age 51, unknown 66.1
1954 Female, age 42, unknown 65.2
1821 Female, age 72, unknown 63.5
1904 Male, age 53, unknown 62.5
2588 Male, age 74, left hemisphere 61.3
2823 Male, age 76, right hemisphere 60.7
2785 Male, age 18, unknown 60.2
2227 Male, age 72, unknown 59.9
2769 Male, age 72, unknown 58.2
2725 Female, age 75, unknown 53.1
2584 Male, age 75, left hemisphere 52.1
Substantia nigra
nTPM: 50.3
2583 Male, age 75, right hemisphere 57.4
2590 Female, age 75, unknown 56.0
2699 Male, age 18, unknown 52.6
1889 Female, age 72, unknown 50.3
1851 Male, age 51, unknown 49.3
2409 Female, age 72, unknown 49.2
2241 Male, age 72, unknown 48.1
1941 Male, age 53, unknown 47.6
1916 Female, age 42, unknown 47.4
2665 Male, age 74, both hemispheres 45.3
Superior colliculus
nTPM: 51.7
1913 Female, age 42, unknown 60.9
1895 Male, age 76, right hemisphere 57.9
1995 Male, age 72, unknown 57.6
1839 Male, age 51, unknown 53.8
2587 Male, age 74, left hemisphere 51.2
2668 Female, age 75, unknown 49.2
2087 Female, age 72, unknown 48.4
2664 Male, age 75, both hemispheres 47.2
1796 Male, age 53, unknown 46.0
2261 Male, age 18, unknown 44.9
Ventral tegmental area
nTPM: 50.1
2410 Female, age 72, unknown 53.9
2223 Female, age 72, unknown 51.9
2021 Male, age 53, unknown 49.5
2218 Male, age 76, both hemispheres 49.5
1915 Female, age 42, unknown 48.2
1942 Male, age 51, unknown 47.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 48.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.4
Samples: 139

Max nTPM: 147.8
Min nTPM: 24.6
Std nTPM: 17.1
Median nTPM: 44.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 147.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 96.1
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 93.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 93.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 84.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 83.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 79.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 78.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 77.2
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 76.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 75.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 77.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 77.6
FF:10158-103A5 76 years, female 77.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 83.5
Pig sample Sample description nTPM
Midbrain
nTPM: 83.5
Samples: 4

Max nTPM: 105.6
Min nTPM: 64.0
Sample A Female 105.6
Sample B Female 90.8
Sample C Male 73.6
Sample D Male 64.0
Periaqueductal gray
nTPM: 71.9
Samples: 3

Max nTPM: 74.9
Min nTPM: 66.8
Sample B Female 74.9
Sample C Male 66.8
Sample D Male 73.9
Substantia nigra
nTPM: 76.1
Samples: 4

Max nTPM: 94.5
Min nTPM: 63.1
Sample A Female 70.1
Sample B Female 63.1
Sample C Male 76.6
Sample D Male 94.5
Superior colliculi
nTPM: 66.1
Samples: 4

Max nTPM: 81.1
Min nTPM: 42.2
Sample A Female 61.5
Sample B Female 42.2
Sample C Male 81.1
Sample D Male 79.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.0
Samples: 4

Max nTPM: 22.9
Min nTPM: 17.7
Sample A Male 17.7
Sample B Male 22.9
Sample C Female 22.5
Sample D Female 20.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
70231893 Antisense, RP_050526_02_C01, Mouse strain C57BL/6J (56 days, male) 3.6
73635978 Antisense, RP_051101_03_C11, Mouse strain C57BL/6J (56 days, male) 2.4
71723845 Antisense, RP_050921_01_A06, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.