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CACYBP
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:61.8 nTPM
HPA:61.8 nTPM
GTEx:55.2 nTPM
FANTOM5:215.3 Scaled Tags Per Million
Pig:40.2 nTPM
Mouse:93.8 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 61.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.6
1827 Male, age 72, unknown 66.8
2219 Male, age 76, both hemispheres 66.0
2411 Female, age 72, unknown 65.2
1833 Male, age 53, unknown 62.0
1830 Male, age 51, unknown 60.1
2828 Female, age 72, unknown 52.3
2019 Male, age 18, unknown 51.8
1870 Female, age 42, unknown 50.3
2666 Male, age 74, left hemisphere 49.5
2586 Male, age 75, left hemisphere 41.8
Dorsal raphe nucleus
nTPM: 53.0
2047 Male, age 72, unknown 60.4
2750 Male, age 76, both hemispheres 55.3
1828 Male, age 53, unknown 53.9
2016 Female, age 72, unknown 48.6
2298 Female, age 72, unknown 47.0
Inferior colliculus
nTPM: 57.3
2849 Male, age 72, unknown 70.2
1848 Female, age 42, unknown 60.8
2097 Female, age 72, unknown 50.4
1890 Male, age 53, unknown 47.7
Median raphe nucleus
nTPM: 60.3
2220 Male, age 76, midline 60.3
Pedunculopontine tegmental nucleus
nTPM: 60.6
1921 Female, age 85, both hemispheres 65.1
2334 Male, age 80, both hemispheres 63.1
2338 Male, age 61, both hemispheres 53.6
Periaquaductal grey, anterior
nTPM: 54.5
1947 Male, age 18, unknown 66.1
2502 Female, age 75, unknown 49.5
1795 Male, age 51, unknown 48.0
Periaquaductal grey, dorsal
nTPM: 54.7
2850 Male, age 76, both hemispheres 61.1
2464 Female, age 72, unknown 55.6
1840 Male, age 53, unknown 53.6
1831 Male, age 72, unknown 48.4
Periaquaductal grey, lateral
nTPM: 52.4
2053 Male, age 18, unknown 56.5
2272 Male, age 74, both hemispheres 53.7
2140 Male, age 76, both hemispheres 47.1
Pretectal area
nTPM: 55.7
1944 Female, age 72, unknown 72.4
2407 Male, age 75, both hemispheres 67.9
1815 Male, age 53, unknown 62.4
1817 Female, age 42, unknown 57.1
2224 Female, age 72, unknown 56.7
2667 Female, age 75, unknown 54.7
1816 Male, age 51, unknown 52.6
2825 Male, age 18, unknown 52.2
2007 Male, age 72, unknown 49.0
2273 Male, age 74, both hemispheres 48.7
2316 Male, age 76, right hemisphere 39.0
Red nucleus
nTPM: 51.5
2584 Male, age 75, left hemisphere 62.0
1821 Female, age 72, unknown 61.2
1954 Female, age 42, unknown 57.8
2725 Female, age 75, unknown 56.6
1865 Male, age 51, unknown 50.8
2227 Male, age 72, unknown 49.6
2769 Male, age 72, unknown 49.5
1904 Male, age 53, unknown 48.8
2823 Male, age 76, right hemisphere 46.4
2785 Male, age 18, unknown 45.8
2588 Male, age 74, left hemisphere 45.6
2503 Female, age 72, unknown 43.7
Substantia nigra
nTPM: 61.8
2409 Female, age 72, unknown 88.7
1941 Male, age 53, unknown 75.8
1916 Female, age 42, unknown 62.8
1889 Female, age 72, unknown 60.4
2241 Male, age 72, unknown 58.4
1851 Male, age 51, unknown 58.1
2699 Male, age 18, unknown 57.7
2590 Female, age 75, unknown 55.7
2583 Male, age 75, right hemisphere 51.8
2665 Male, age 74, both hemispheres 48.5
Superior colliculus
nTPM: 52.9
2587 Male, age 74, left hemisphere 65.6
1839 Male, age 51, unknown 58.6
1913 Female, age 42, unknown 56.7
2668 Female, age 75, unknown 54.8
1895 Male, age 76, right hemisphere 52.1
2261 Male, age 18, unknown 51.9
2664 Male, age 75, both hemispheres 50.1
2087 Female, age 72, unknown 48.3
1796 Male, age 53, unknown 47.4
1995 Male, age 72, unknown 44.1
Ventral tegmental area
nTPM: 58.1
2410 Female, age 72, unknown 75.2
2223 Female, age 72, unknown 58.6
1942 Male, age 51, unknown 57.2
2218 Male, age 76, both hemispheres 54.2
1915 Female, age 42, unknown 52.7
2021 Male, age 53, unknown 50.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 55.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.2
Samples: 139

Max nTPM: 226.2
Min nTPM: 23.2
Std nTPM: 32.2
Median nTPM: 48.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 226.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 203.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 167.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 148.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 148.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 130.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 114.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 114.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 113.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 110.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 106.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 215.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 215.3
FF:10158-103A5 76 years, female 215.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 40.2
Pig sample Sample description nTPM
Midbrain
nTPM: 35.8
Samples: 4

Max nTPM: 42.9
Min nTPM: 31.1
Sample A Female 42.9
Sample B Female 31.1
Sample C Male 34.6
Sample D Male 34.6
Periaqueductal gray
nTPM: 33.5
Samples: 3

Max nTPM: 37.7
Min nTPM: 29.8
Sample B Female 29.8
Sample C Male 37.7
Sample D Male 33.1
Substantia nigra
nTPM: 38.8
Samples: 4

Max nTPM: 51.6
Min nTPM: 28.7
Sample A Female 51.6
Sample B Female 33.0
Sample C Male 41.8
Sample D Male 28.7
Superior colliculi
nTPM: 40.2
Samples: 4

Max nTPM: 48.4
Min nTPM: 26.1
Sample A Female 48.4
Sample B Female 26.1
Sample C Male 45.7
Sample D Male 40.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 93.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 93.8
Samples: 4

Max nTPM: 96.1
Min nTPM: 92.0
Sample A Male 92.8
Sample B Male 96.1
Sample C Female 92.0
Sample D Female 94.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
75144703 Antisense, RP_060220_02_B02, Mouse strain C57BL/6J (56 days, male) 1.6
68203482 Antisense, RP_041208_01_C02, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.