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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:45.4 nTPM
HPA:45.4 nTPM
GTEx:49.4 nTPM
FANTOM5:68.5 Scaled Tags Per Million
Pig:63.2 nTPM
Mouse:31.7 nTPM
Allen mouse:4.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA050975
Glial cells High
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 45.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 44.3
2288 Male, age 75, left hemisphere 47.4
2481 Female, age 94, left hemisphere 46.4
2846 Female, age 79, unknown 44.5
1781 Male, age 74, unknown 44.3
1857 Female, age 85, left hemisphere 43.7
2289 Male, age 61, right hemisphere 43.6
2290 Female, age 72, unknown 42.5
1854 Male, age 80, left hemisphere 41.7
Claustrum
nTPM: 43.0
2196 Female, age 79, unknown 45.9
1956 Male, age 74, unknown 45.4
2292 Female, age 85, both hemispheres 44.8
2198 Male, age 80, both hemispheres 43.6
2491 Male, age 75, both hemispheres 42.9
2568 Male, age 61, both hemispheres 42.2
2284 Female, age 91, both hemispheres 40.9
2645 Female, age 72, unknown 40.7
2392 Female, age 94, both hemispheres 40.3
Globus pallidus, externus
nTPM: 44.7
2567 Female, age 72, unknown 46.7
1996 Male, age 80, right hemisphere 45.1
2646 Male, age 61, right hemisphere 44.6
2772 Female, age 79, unknown 44.1
2395 Male, age 75, both hemispheres 43.1
Globus pallidus, internus
nTPM: 45.4
2483 Female, age 94, right hemisphere 48.2
2287 Male, age 75, right hemisphere 48.1
2778 Female, age 91, both hemispheres 45.1
2111 Female, age 85, right hemisphere 44.9
2566 Female, age 72, unknown 44.9
2037 Male, age 80, right hemisphere 43.3
1818 Male, age 74, unknown 43.2
Nucleus accumbens
nTPM: 42.9
2698 Female, age 72, unknown 44.8
2391 Female, age 94, left hemisphere 44.7
1806 Female, age 85, left hemisphere 44.4
2286 Male, age 75, left hemisphere 44.3
1783 Male, age 74, unknown 44.2
2732 Male, age 80, right hemisphere 42.5
2824 Male, age 61, right hemisphere 39.5
1856 Female, age 91, right hemisphere 39.3
Nucleus basalis of Meynert
nTPM: 44.0
2821 Male, age 75, both hemispheres 46.9
2569 Male, age 61, both hemispheres 44.6
2484 Female, age 94, left hemisphere 43.3
2393 Male, age 80, right hemisphere 41.3
Nucleus of the diagonal band
nTPM: 42.2
1979 Male, age 74, unknown 45.3
2195 Female, age 85, both hemispheres 42.6
1812 Female, age 91, both hemispheres 42.5
2775 Male, age 80, right hemisphere 41.9
2029 Male, age 61, right hemisphere 38.7
Olfactory tubercle
nTPM: 40.8
1846 Male, age 80, right hemisphere 42.0
2856 Male, age 75, right hemisphere 42.0
1998 Female, age 91, both hemispheres 39.6
2487 Female, age 94, left hemisphere 39.5
Putamen
nTPM: 43.8
2482 Female, age 94, left hemisphere 46.8
2489 Female, age 72, unknown 46.2
2647 Male, age 75, left hemisphere 45.8
1829 Male, age 74, unknown 43.5
2466 Female, age 79, unknown 42.4
1838 Male, age 80, right hemisphere 41.3
1937 Female, age 91, right hemisphere 40.5
Septal nuclei
nTPM: 42.0
2629 Female, age 94, right hemisphere 44.8
1960 Male, age 74, unknown 43.4
2059 Female, age 85, both hemispheres 42.6
2199 Male, age 80, right hemisphere 42.6
2009 Female, age 91, both hemispheres 41.2
2394 Male, age 61, left hemisphere 40.2
2031 Female, age 72, unknown 39.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 49.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 47.0
Samples: 246

Max nTPM: 75.0
Min nTPM: 32.7
Std nTPM: 5.7
Median nTPM: 46.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 75.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 62.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 61.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 60.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 60.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 60.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 59.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 58.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 58.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 58.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 57.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 45.4
Samples: 246

Max nTPM: 74.3
Min nTPM: 29.7
Std nTPM: 5.9
Median nTPM: 44.9
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 74.3
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 63.9
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 63.3
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 59.9
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 59.9
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 59.4
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 58.9
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 58.3
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 56.6
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 56.6
GTEX-13SLX-0011-R6a-SM-5PNX4 50-59 years, female 56.3
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Brain - Putamen (basal ganglia)
Average nTPM: 49.4
Samples: 205

Max nTPM: 70.4
Min nTPM: 29.4
Std nTPM: 6.4
Median nTPM: 48.9
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 70.4
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 69.8
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 65.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 65.6
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 65.6
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 65.1
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 64.1
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 62.3
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 61.7
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 61.3
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 60.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 53.2
FF:10164-103B2 76 years, female 53.2
Globus pallidus
Scaled Tags Per Million: 68.5
FF:10161-103A8 76 years, female 78.7
FF:10175-103C4 60 years, female 58.4
Nucleus accumbens
Scaled Tags Per Million: 56.2
FF:10037-101F1 23-56 years, mixed 56.2
Putamen
Scaled Tags Per Million: 66.6
FF:10176-103C5 60 years, female 66.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 63.2
Pig sample Sample description nTPM
Caudate
nTPM: 60.9
Samples: 4

Max nTPM: 69.5
Min nTPM: 55.2
Sample A Female 55.2
Sample B Female 59.8
Sample C Male 69.5
Sample D Male 59.1
Putamen
nTPM: 63.2
Samples: 4

Max nTPM: 73.1
Min nTPM: 52.3
Sample A Female 52.3
Sample B Female 61.5
Sample C Male 73.1
Sample D Male 66.0
Septum
nTPM: 53.9
Samples: 4

Max nTPM: 58.9
Min nTPM: 49.4
Sample A Female 58.9
Sample B Female 55.8
Sample C Male 49.4
Sample D Male 51.6
Ventral pallidum
nTPM: 59.2
Samples: 4

Max nTPM: 62.8
Min nTPM: 54.0
Sample A Female 58.2
Sample B Female 62.8
Sample C Male 54.0
Sample D Male 61.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 31.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 29.6
Samples: 4

Max nTPM: 33.8
Min nTPM: 25.5
Sample A Male 28.6
Sample B Male 33.8
Sample C Female 25.5
Sample D Female 30.3
Septum
nTPM: 31.7
Samples: 4

Max nTPM: 34.0
Min nTPM: 28.7
Sample A Male 33.0
Sample B Male 28.7
Sample C Female 31.2
Sample D Female 34.0
Ventral forebrain
nTPM: 31.7
Samples: 4

Max nTPM: 35.7
Min nTPM: 29.6
Sample A Male 31.8
Sample B Male 29.7
Sample C Female 35.7
Sample D Female 29.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.0
641542 Antisense, RP_040914_01_G01, Mouse strain C57BL/6J (56 days, male) 4.0
Pallidum
Expression energy: 2.9
641542 Antisense, RP_040914_01_G01, Mouse strain C57BL/6J (56 days, male) 2.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.