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SRSF4
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.7 nTPM
HPA:43.7 nTPM
GTEx:48.0 nTPM
FANTOM5:75.5 Scaled Tags Per Million
Pig:54.3 nTPM
Mouse:22.4 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.7
2666 Male, age 74, left hemisphere 43.4
1827 Male, age 72, unknown 43.3
1870 Female, age 42, unknown 43.2
1830 Male, age 51, unknown 42.2
2828 Female, age 72, unknown 41.9
1833 Male, age 53, unknown 41.4
2019 Male, age 18, unknown 41.2
2586 Male, age 75, left hemisphere 40.8
2219 Male, age 76, both hemispheres 39.9
2411 Female, age 72, unknown 39.9
Dorsal raphe nucleus
nTPM: 40.5
2750 Male, age 76, both hemispheres 41.7
2016 Female, age 72, unknown 40.9
1828 Male, age 53, unknown 40.5
2298 Female, age 72, unknown 40.5
2047 Male, age 72, unknown 38.8
Inferior colliculus
nTPM: 41.9
2849 Male, age 72, unknown 43.4
2097 Female, age 72, unknown 41.6
1848 Female, age 42, unknown 41.4
1890 Male, age 53, unknown 41.2
Median raphe nucleus
nTPM: 43.4
2220 Male, age 76, midline 43.4
Pedunculopontine tegmental nucleus
nTPM: 43.1
2334 Male, age 80, both hemispheres 44.1
2338 Male, age 61, both hemispheres 43.0
1921 Female, age 85, both hemispheres 42.0
Periaquaductal grey, anterior
nTPM: 42.9
2502 Female, age 75, unknown 43.9
1795 Male, age 51, unknown 42.6
1947 Male, age 18, unknown 42.2
Periaquaductal grey, dorsal
nTPM: 42.4
2850 Male, age 76, both hemispheres 45.9
1831 Male, age 72, unknown 42.4
1840 Male, age 53, unknown 41.2
2464 Female, age 72, unknown 40.0
Periaquaductal grey, lateral
nTPM: 42.1
2140 Male, age 76, both hemispheres 45.0
2053 Male, age 18, unknown 40.9
2272 Male, age 74, both hemispheres 40.5
Pretectal area
nTPM: 42.3
2316 Male, age 76, right hemisphere 45.0
1816 Male, age 51, unknown 43.8
1817 Female, age 42, unknown 43.0
2007 Male, age 72, unknown 43.0
1815 Male, age 53, unknown 42.8
2224 Female, age 72, unknown 42.2
2825 Male, age 18, unknown 42.1
2407 Male, age 75, both hemispheres 41.2
2667 Female, age 75, unknown 41.0
1944 Female, age 72, unknown 40.9
2273 Male, age 74, both hemispheres 40.7
Red nucleus
nTPM: 43.7
2725 Female, age 75, unknown 47.2
2503 Female, age 72, unknown 46.1
2588 Male, age 74, left hemisphere 44.6
1954 Female, age 42, unknown 43.7
1821 Female, age 72, unknown 43.6
1865 Male, age 51, unknown 43.6
2227 Male, age 72, unknown 43.3
2785 Male, age 18, unknown 43.2
1904 Male, age 53, unknown 43.1
2769 Male, age 72, unknown 42.7
2823 Male, age 76, right hemisphere 42.6
2584 Male, age 75, left hemisphere 41.0
Substantia nigra
nTPM: 41.3
2699 Male, age 18, unknown 43.9
2665 Male, age 74, both hemispheres 42.7
1889 Female, age 72, unknown 42.6
1916 Female, age 42, unknown 41.8
2590 Female, age 75, unknown 41.2
1941 Male, age 53, unknown 41.1
1851 Male, age 51, unknown 41.0
2409 Female, age 72, unknown 40.6
2241 Male, age 72, unknown 39.2
2583 Male, age 75, right hemisphere 38.7
Superior colliculus
nTPM: 42.3
1796 Male, age 53, unknown 44.1
1995 Male, age 72, unknown 43.8
1913 Female, age 42, unknown 43.6
1895 Male, age 76, right hemisphere 42.8
2261 Male, age 18, unknown 42.7
2587 Male, age 74, left hemisphere 42.5
2087 Female, age 72, unknown 42.1
1839 Male, age 51, unknown 42.0
2664 Male, age 75, both hemispheres 39.9
2668 Female, age 75, unknown 39.9
Ventral tegmental area
nTPM: 41.5
2218 Male, age 76, both hemispheres 43.5
2223 Female, age 72, unknown 42.2
2021 Male, age 53, unknown 41.8
1915 Female, age 42, unknown 41.2
1942 Male, age 51, unknown 40.4
2410 Female, age 72, unknown 40.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 48.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.0
Samples: 139

Max nTPM: 80.0
Min nTPM: 23.0
Std nTPM: 8.2
Median nTPM: 47.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 80.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 75.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 68.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 67.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 65.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 65.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 65.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 65.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 63.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 62.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 62.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 75.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 75.5
FF:10158-103A5 76 years, female 75.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 54.3
Pig sample Sample description nTPM
Midbrain
nTPM: 52.8
Samples: 4

Max nTPM: 58.2
Min nTPM: 46.1
Sample A Female 58.2
Sample B Female 46.1
Sample C Male 54.7
Sample D Male 52.3
Periaqueductal gray
nTPM: 49.2
Samples: 3

Max nTPM: 50.7
Min nTPM: 46.8
Sample B Female 46.8
Sample C Male 50.7
Sample D Male 50.2
Substantia nigra
nTPM: 49.9
Samples: 4

Max nTPM: 57.8
Min nTPM: 45.4
Sample A Female 45.4
Sample B Female 46.2
Sample C Male 50.1
Sample D Male 57.8
Superior colliculi
nTPM: 54.3
Samples: 4

Max nTPM: 57.7
Min nTPM: 49.9
Sample A Female 49.9
Sample B Female 52.0
Sample C Male 57.7
Sample D Male 57.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.5
Samples: 4

Max nTPM: 24.7
Min nTPM: 20.9
Sample A Male 24.7
Sample B Male 20.9
Sample C Female 22.2
Sample D Female 22.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
641542 Antisense, RP_040914_01_G01, Mouse strain C57BL/6J (56 days, male) 2.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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