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LAMTOR2
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:82.5 nTPM
HPA:82.5 nTPM
GTEx:71.0 nTPM
FANTOM5:48.0 Scaled Tags Per Million
Pig:14.4 nTPM
Mouse:104.7 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 82.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 78.6
2019 Male, age 18, unknown 82.3
1827 Male, age 72, unknown 81.2
2828 Female, age 72, unknown 80.2
1870 Female, age 42, unknown 79.2
2411 Female, age 72, unknown 78.4
2219 Male, age 76, both hemispheres 77.8
1833 Male, age 53, unknown 77.3
2666 Male, age 74, left hemisphere 77.2
1830 Male, age 51, unknown 76.3
2586 Male, age 75, left hemisphere 76.2
Dorsal raphe nucleus
nTPM: 80.1
2298 Female, age 72, unknown 84.6
1828 Male, age 53, unknown 79.6
2750 Male, age 76, both hemispheres 79.3
2016 Female, age 72, unknown 79.0
2047 Male, age 72, unknown 78.2
Inferior colliculus
nTPM: 79.5
2097 Female, age 72, unknown 82.3
1890 Male, age 53, unknown 79.2
1848 Female, age 42, unknown 78.9
2849 Male, age 72, unknown 77.5
Median raphe nucleus
nTPM: 80.0
2220 Male, age 76, midline 80.0
Pedunculopontine tegmental nucleus
nTPM: 79.6
2334 Male, age 80, both hemispheres 80.8
1921 Female, age 85, both hemispheres 79.9
2338 Male, age 61, both hemispheres 78.3
Periaquaductal grey, anterior
nTPM: 80.8
1795 Male, age 51, unknown 83.0
2502 Female, age 75, unknown 80.2
1947 Male, age 18, unknown 79.1
Periaquaductal grey, dorsal
nTPM: 78.1
1831 Male, age 72, unknown 78.9
2850 Male, age 76, both hemispheres 78.3
1840 Male, age 53, unknown 77.6
2464 Female, age 72, unknown 77.5
Periaquaductal grey, lateral
nTPM: 80.6
2272 Male, age 74, both hemispheres 83.7
2053 Male, age 18, unknown 80.3
2140 Male, age 76, both hemispheres 77.9
Pretectal area
nTPM: 82.5
2007 Male, age 72, unknown 85.5
1816 Male, age 51, unknown 85.2
2273 Male, age 74, both hemispheres 85.1
1944 Female, age 72, unknown 83.6
1817 Female, age 42, unknown 83.5
2224 Female, age 72, unknown 82.8
1815 Male, age 53, unknown 82.3
2667 Female, age 75, unknown 81.8
2407 Male, age 75, both hemispheres 79.8
2316 Male, age 76, right hemisphere 79.4
2825 Male, age 18, unknown 78.5
Red nucleus
nTPM: 80.1
1821 Female, age 72, unknown 83.0
2785 Male, age 18, unknown 81.8
2725 Female, age 75, unknown 81.5
2503 Female, age 72, unknown 80.5
2823 Male, age 76, right hemisphere 80.5
1865 Male, age 51, unknown 80.2
1904 Male, age 53, unknown 80.2
2227 Male, age 72, unknown 80.0
1954 Female, age 42, unknown 79.6
2769 Male, age 72, unknown 79.4
2584 Male, age 75, left hemisphere 77.6
2588 Male, age 74, left hemisphere 76.6
Substantia nigra
nTPM: 80.7
1916 Female, age 42, unknown 83.4
1889 Female, age 72, unknown 82.8
1851 Male, age 51, unknown 82.2
2409 Female, age 72, unknown 80.7
1941 Male, age 53, unknown 80.5
2699 Male, age 18, unknown 80.3
2241 Male, age 72, unknown 80.0
2590 Female, age 75, unknown 79.8
2665 Male, age 74, both hemispheres 79.5
2583 Male, age 75, right hemisphere 77.9
Superior colliculus
nTPM: 80.3
1796 Male, age 53, unknown 83.4
2587 Male, age 74, left hemisphere 82.6
2087 Female, age 72, unknown 80.9
2261 Male, age 18, unknown 80.7
2668 Female, age 75, unknown 80.4
1913 Female, age 42, unknown 80.3
1895 Male, age 76, right hemisphere 79.8
1995 Male, age 72, unknown 79.4
1839 Male, age 51, unknown 78.0
2664 Male, age 75, both hemispheres 77.9
Ventral tegmental area
nTPM: 80.3
1915 Female, age 42, unknown 82.2
2218 Male, age 76, both hemispheres 81.4
2410 Female, age 72, unknown 80.4
2021 Male, age 53, unknown 79.7
1942 Male, age 51, unknown 79.4
2223 Female, age 72, unknown 78.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 71.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 71.0
Samples: 139

Max nTPM: 137.7
Min nTPM: 37.1
Std nTPM: 17.1
Median nTPM: 67.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 137.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 120.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 119.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 116.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 114.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 110.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 109.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 109.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 106.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 105.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 101.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.0
FF:10158-103A5 76 years, female 48.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.4
Pig sample Sample description nTPM
Midbrain
nTPM: 13.2
Samples: 4

Max nTPM: 14.5
Min nTPM: 11.8
Sample A Female 14.5
Sample B Female 12.6
Sample C Male 14.0
Sample D Male 11.8
Periaqueductal gray
nTPM: 11.2
Samples: 3

Max nTPM: 12.7
Min nTPM: 10.4
Sample B Female 10.6
Sample C Male 12.7
Sample D Male 10.4
Substantia nigra
nTPM: 13.9
Samples: 4

Max nTPM: 20.1
Min nTPM: 9.3
Sample A Female 20.1
Sample B Female 10.6
Sample C Male 15.4
Sample D Male 9.3
Superior colliculi
nTPM: 14.4
Samples: 4

Max nTPM: 17.5
Min nTPM: 11.9
Sample A Female 17.5
Sample B Female 11.9
Sample C Male 15.7
Sample D Male 12.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 104.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 104.7
Samples: 4

Max nTPM: 113.2
Min nTPM: 98.0
Sample A Male 113.2
Sample B Male 98.0
Sample C Female 98.1
Sample D Female 109.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
70546111 Antisense, RP_050623_03_F04, Mouse strain C57BL/6J (56 days, male) 1.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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