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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.6 nTPM
HPA:13.6 nTPM
GTEx:14.7 nTPM
FANTOM5:60.8 Scaled Tags Per Million
Pig:34.4 nTPM
Mouse:10.9 nTPM
Allen mouse:1.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 13.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 13.6
2481 Female, age 94, left hemisphere 20.7
1857 Female, age 85, left hemisphere 16.0
2289 Male, age 61, right hemisphere 15.7
1854 Male, age 80, left hemisphere 14.1
2290 Female, age 72, unknown 12.5
2288 Male, age 75, left hemisphere 11.4
2846 Female, age 79, unknown 9.8
1781 Male, age 74, unknown 8.3
Claustrum
nTPM: 6.1
2392 Female, age 94, both hemispheres 8.3
2196 Female, age 79, unknown 6.9
2491 Male, age 75, both hemispheres 6.8
2198 Male, age 80, both hemispheres 6.3
2568 Male, age 61, both hemispheres 6.1
2284 Female, age 91, both hemispheres 5.9
1956 Male, age 74, unknown 5.8
2645 Female, age 72, unknown 5.5
2292 Female, age 85, both hemispheres 3.6
Globus pallidus, externus
nTPM: 8.8
1996 Male, age 80, right hemisphere 12.1
2772 Female, age 79, unknown 9.2
2646 Male, age 61, right hemisphere 8.8
2395 Male, age 75, both hemispheres 7.4
2567 Female, age 72, unknown 6.2
Globus pallidus, internus
nTPM: 8.9
2483 Female, age 94, right hemisphere 11.8
1818 Male, age 74, unknown 11.0
2037 Male, age 80, right hemisphere 11.0
2778 Female, age 91, both hemispheres 8.9
2287 Male, age 75, right hemisphere 8.1
2111 Female, age 85, right hemisphere 5.8
2566 Female, age 72, unknown 5.4
Nucleus accumbens
nTPM: 11.2
2391 Female, age 94, left hemisphere 12.8
2286 Male, age 75, left hemisphere 12.7
1856 Female, age 91, right hemisphere 12.6
1806 Female, age 85, left hemisphere 12.2
2824 Male, age 61, right hemisphere 10.8
2698 Female, age 72, unknown 10.1
2732 Male, age 80, right hemisphere 9.7
1783 Male, age 74, unknown 8.6
Nucleus basalis of Meynert
nTPM: 9.8
2393 Male, age 80, right hemisphere 13.9
2569 Male, age 61, both hemispheres 10.1
2484 Female, age 94, left hemisphere 8.9
2821 Male, age 75, both hemispheres 6.4
Nucleus of the diagonal band
nTPM: 10.0
1812 Female, age 91, both hemispheres 11.9
1979 Male, age 74, unknown 10.9
2775 Male, age 80, right hemisphere 10.1
2029 Male, age 61, right hemisphere 8.8
2195 Female, age 85, both hemispheres 8.5
Olfactory tubercle
nTPM: 11.0
1846 Male, age 80, right hemisphere 14.3
2856 Male, age 75, right hemisphere 12.6
2487 Female, age 94, left hemisphere 9.5
1998 Female, age 91, both hemispheres 7.8
Putamen
nTPM: 11.6
2482 Female, age 94, left hemisphere 16.4
1838 Male, age 80, right hemisphere 14.6
1937 Female, age 91, right hemisphere 12.0
1829 Male, age 74, unknown 11.3
2466 Female, age 79, unknown 9.2
2647 Male, age 75, left hemisphere 8.8
2489 Female, age 72, unknown 8.7
Septal nuclei
nTPM: 11.0
2199 Male, age 80, right hemisphere 14.5
2629 Female, age 94, right hemisphere 12.1
2009 Female, age 91, both hemispheres 11.7
2059 Female, age 85, both hemispheres 10.4
2031 Female, age 72, unknown 10.3
2394 Male, age 61, left hemisphere 8.9
1960 Male, age 74, unknown 8.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 14.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 14.7
Samples: 246

Max nTPM: 25.0
Min nTPM: 4.7
Std nTPM: 3.4
Median nTPM: 14.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 25.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 24.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 23.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 22.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 22.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 21.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 20.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 20.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 20.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 20.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 20.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 11.8
Samples: 246

Max nTPM: 20.9
Min nTPM: 2.9
Std nTPM: 3.2
Median nTPM: 11.7
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 20.9
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 19.3
GTEX-13X6K-0011-R6a-SM-5P9K6 60-69 years, female 18.9
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 18.6
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 18.5
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 18.3
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 18.3
GTEX-1I1GQ-0011-R6b-SM-CE6SE 50-59 years, male 18.3
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 17.8
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 17.8
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 17.7
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Brain - Putamen (basal ganglia)
Average nTPM: 12.8
Samples: 205

Max nTPM: 22.3
Min nTPM: 4.9
Std nTPM: 3.5
Median nTPM: 12.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 22.3
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 21.9
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 21.6
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 21.2
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 20.6
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 20.5
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 20.5
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 20.4
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 19.6
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 19.3
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 19.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 60.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 60.8
FF:10164-103B2 76 years, female 60.8
Globus pallidus
Scaled Tags Per Million: 43.3
FF:10175-103C4 60 years, female 44.2
FF:10161-103A8 76 years, female 42.4
Nucleus accumbens
Scaled Tags Per Million: 35.1
FF:10037-101F1 23-56 years, mixed 35.1
Putamen
Scaled Tags Per Million: 50.0
FF:10176-103C5 60 years, female 50.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 34.4
Pig sample Sample description nTPM
Caudate
nTPM: 31.7
Samples: 4

Max nTPM: 33.7
Min nTPM: 29.9
Sample A Female 29.9
Sample B Female 31.4
Sample C Male 33.7
Sample D Male 31.9
Putamen
nTPM: 34.4
Samples: 4

Max nTPM: 42.3
Min nTPM: 28.4
Sample A Female 28.4
Sample B Female 35.1
Sample C Male 42.3
Sample D Male 31.9
Septum
nTPM: 29.4
Samples: 4

Max nTPM: 38.9
Min nTPM: 25.0
Sample A Female 25.0
Sample B Female 25.3
Sample C Male 28.5
Sample D Male 38.9
Ventral pallidum
nTPM: 26.4
Samples: 4

Max nTPM: 29.2
Min nTPM: 23.5
Sample A Female 29.2
Sample B Female 29.1
Sample C Male 23.7
Sample D Male 23.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 10.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 9.3
Samples: 4

Max nTPM: 11.5
Min nTPM: 7.3
Sample A Male 11.5
Sample B Male 9.6
Sample C Female 7.3
Sample D Female 8.9
Septum
nTPM: 10.9
Samples: 4

Max nTPM: 11.5
Min nTPM: 10.4
Sample A Male 10.7
Sample B Male 11.5
Sample C Female 10.4
Sample D Female 11.0
Ventral forebrain
nTPM: 9.3
Samples: 4

Max nTPM: 11.5
Min nTPM: 5.6
Sample A Male 11.5
Sample B Male 11.3
Sample C Female 5.6
Sample D Female 8.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.0
70298142 Antisense, RP_050602_01_A08, Mouse strain C57BL/6J (56 days, male) 2.1
68845633 Antisense, RP_050224_02_B12, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.8
70298142 Antisense, RP_050602_01_A08, Mouse strain C57BL/6J (56 days, male) 1.7
68845633 Antisense, RP_050224_02_B12, Mouse strain C57BL/6J (56 days, male) 0.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.