ABOUTMENU
HELP
NEWS
SRM
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:54.8 nTPM
HPA:54.8 nTPM
GTEx:85.5 nTPM
FANTOM5:92.4 Scaled Tags Per Million
Pig:9.9 nTPM
Mouse:98.7 nTPM
Allen mouse:5.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA015746
Glial cells Not detected
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 54.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 54.3
2290 Female, age 72, unknown 58.7
1857 Female, age 85, left hemisphere 58.5
2846 Female, age 79, unknown 56.4
1854 Male, age 80, left hemisphere 56.2
1781 Male, age 74, unknown 54.3
2289 Male, age 61, right hemisphere 51.7
2481 Female, age 94, left hemisphere 50.3
2288 Male, age 75, left hemisphere 48.5
Claustrum
nTPM: 48.7
2198 Male, age 80, both hemispheres 52.4
2196 Female, age 79, unknown 52.1
2645 Female, age 72, unknown 51.8
2568 Male, age 61, both hemispheres 50.8
2491 Male, age 75, both hemispheres 49.0
2284 Female, age 91, both hemispheres 47.9
2292 Female, age 85, both hemispheres 46.1
1956 Male, age 74, unknown 45.6
2392 Female, age 94, both hemispheres 42.7
Globus pallidus, externus
nTPM: 48.2
2772 Female, age 79, unknown 51.1
1996 Male, age 80, right hemisphere 50.6
2646 Male, age 61, right hemisphere 49.1
2567 Female, age 72, unknown 47.6
2395 Male, age 75, both hemispheres 42.5
Globus pallidus, internus
nTPM: 46.7
2483 Female, age 94, right hemisphere 51.3
2287 Male, age 75, right hemisphere 49.3
2566 Female, age 72, unknown 47.0
2037 Male, age 80, right hemisphere 46.2
2778 Female, age 91, both hemispheres 45.4
1818 Male, age 74, unknown 44.1
2111 Female, age 85, right hemisphere 43.6
Nucleus accumbens
nTPM: 52.5
1806 Female, age 85, left hemisphere 60.8
1856 Female, age 91, right hemisphere 59.2
1783 Male, age 74, unknown 58.7
2698 Female, age 72, unknown 53.3
2824 Male, age 61, right hemisphere 49.2
2732 Male, age 80, right hemisphere 47.7
2286 Male, age 75, left hemisphere 47.2
2391 Female, age 94, left hemisphere 43.6
Nucleus basalis of Meynert
nTPM: 48.9
2569 Male, age 61, both hemispheres 51.3
2484 Female, age 94, left hemisphere 48.9
2393 Male, age 80, right hemisphere 48.3
2821 Male, age 75, both hemispheres 47.3
Nucleus of the diagonal band
nTPM: 54.0
2195 Female, age 85, both hemispheres 62.3
2775 Male, age 80, right hemisphere 56.4
1812 Female, age 91, both hemispheres 52.1
1979 Male, age 74, unknown 51.5
2029 Male, age 61, right hemisphere 47.9
Olfactory tubercle
nTPM: 50.7
2487 Female, age 94, left hemisphere 52.9
1846 Male, age 80, right hemisphere 51.4
1998 Female, age 91, both hemispheres 50.0
2856 Male, age 75, right hemisphere 48.5
Putamen
nTPM: 54.8
2489 Female, age 72, unknown 57.5
1829 Male, age 74, unknown 57.0
2466 Female, age 79, unknown 56.6
1838 Male, age 80, right hemisphere 55.0
2647 Male, age 75, left hemisphere 54.1
1937 Female, age 91, right hemisphere 52.1
2482 Female, age 94, left hemisphere 51.1
Septal nuclei
nTPM: 51.2
1960 Male, age 74, unknown 60.6
2059 Female, age 85, both hemispheres 55.3
2031 Female, age 72, unknown 53.6
2629 Female, age 94, right hemisphere 49.1
2009 Female, age 91, both hemispheres 48.4
2394 Male, age 61, left hemisphere 45.9
2199 Male, age 80, right hemisphere 45.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 85.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 78.8
Samples: 246

Max nTPM: 151.1
Min nTPM: 36.8
Std nTPM: 19.3
Median nTPM: 77.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 151.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 139.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 131.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 126.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 125.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 124.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 123.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 123.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 121.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 119.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 117.5
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 85.5
Samples: 246

Max nTPM: 144.2
Min nTPM: 31.2
Std nTPM: 18.6
Median nTPM: 82.6
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 144.2
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 134.9
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 132.4
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 130.2
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 127.1
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 125.1
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 123.6
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 122.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 122.8
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 122.0
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 121.1
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 80.5
Samples: 205

Max nTPM: 124.9
Min nTPM: 47.1
Std nTPM: 15.3
Median nTPM: 79.8
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 124.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 121.9
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 115.5
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 114.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 112.3
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 111.3
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 110.0
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 109.8
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 109.3
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 108.5
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 107.7
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 92.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 59.3
FF:10164-103B2 76 years, female 59.3
Globus pallidus
Scaled Tags Per Million: 30.9
FF:10161-103A8 76 years, female 40.6
FF:10175-103C4 60 years, female 21.3
Nucleus accumbens
Scaled Tags Per Million: 62.2
FF:10037-101F1 23-56 years, mixed 62.2
Putamen
Scaled Tags Per Million: 92.4
FF:10176-103C5 60 years, female 92.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 9.9
Pig sample Sample description nTPM
Caudate
nTPM: 9.9
Samples: 4

Max nTPM: 11.4
Min nTPM: 7.6
Sample A Female 7.6
Sample B Female 10.5
Sample C Male 11.4
Sample D Male 10.1
Putamen
nTPM: 9.7
Samples: 4

Max nTPM: 10.9
Min nTPM: 7.5
Sample A Female 7.5
Sample B Female 9.5
Sample C Male 10.9
Sample D Male 10.7
Septum
nTPM: 8.4
Samples: 4

Max nTPM: 9.6
Min nTPM: 7.5
Sample A Female 8.6
Sample B Female 9.6
Sample C Male 7.5
Sample D Male 7.7
Ventral pallidum
nTPM: 9.3
Samples: 4

Max nTPM: 10.0
Min nTPM: 8.9
Sample A Female 8.9
Sample B Female 9.3
Sample C Male 10.0
Sample D Male 9.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 98.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 98.7
Samples: 4

Max nTPM: 99.9
Min nTPM: 97.5
Sample A Male 98.7
Sample B Male 99.9
Sample C Female 98.8
Sample D Female 97.5
Septum
nTPM: 55.5
Samples: 4

Max nTPM: 58.5
Min nTPM: 52.8
Sample A Male 58.5
Sample B Male 52.8
Sample C Female 57.3
Sample D Female 53.3
Ventral forebrain
nTPM: 77.0
Samples: 4

Max nTPM: 81.6
Min nTPM: 71.7
Sample A Male 75.4
Sample B Male 71.7
Sample C Female 81.6
Sample D Female 79.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.3
70565276 Antisense, RP_050623_04_F04, Mouse strain C57BL/6J (56 days, male) 7.3
75041563 Antisense, RP_060412_04_F07, Mouse strain C57BL/6J (56 days, male) 5.4
70919878 Antisense, RP_050713_02_C02, Mouse strain C57BL/6J (56 days, male) 3.1
Pallidum
Expression energy: 3.4
70565276 Antisense, RP_050623_04_F04, Mouse strain C57BL/6J (56 days, male) 4.8
75041563 Antisense, RP_060412_04_F07, Mouse strain C57BL/6J (56 days, male) 4.0
70919878 Antisense, RP_050713_02_C02, Mouse strain C57BL/6J (56 days, male) 1.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.