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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:63.8 nTPM
HPA:63.8 nTPM
GTEx:20.2 nTPM
FANTOM5:102.5 Scaled Tags Per Million
Pig:10.4 nTPM
Mouse:42.8 nTPM
Allen mouse:6.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 63.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2.8
1781 Male, age 74, unknown 22.8
1854 Male, age 80, left hemisphere 0.0
1857 Female, age 85, left hemisphere 0.0
2288 Male, age 75, left hemisphere 0.0
2289 Male, age 61, right hemisphere 0.0
2290 Female, age 72, unknown 0.0
2481 Female, age 94, left hemisphere 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 63.8
2284 Female, age 91, both hemispheres 109.9
2491 Male, age 75, both hemispheres 92.3
2568 Male, age 61, both hemispheres 81.8
2645 Female, age 72, unknown 80.8
2198 Male, age 80, both hemispheres 66.8
2392 Female, age 94, both hemispheres 53.9
1956 Male, age 74, unknown 32.6
2196 Female, age 79, unknown 30.5
2292 Female, age 85, both hemispheres 25.4
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 0.3
1856 Female, age 91, right hemisphere 2.5
1783 Male, age 74, unknown 0.0
1806 Female, age 85, left hemisphere 0.0
2286 Male, age 75, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2698 Female, age 72, unknown 0.0
2732 Male, age 80, right hemisphere 0.0
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.0
2393 Male, age 80, right hemisphere 0.0
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 27.5
2029 Male, age 61, right hemisphere 49.1
1812 Female, age 91, both hemispheres 42.6
2775 Male, age 80, right hemisphere 30.6
2195 Female, age 85, both hemispheres 15.1
1979 Male, age 74, unknown 0.0
Olfactory tubercle
nTPM: 47.0
1998 Female, age 91, both hemispheres 82.6
2856 Male, age 75, right hemisphere 49.1
2487 Female, age 94, left hemisphere 34.1
1846 Male, age 80, right hemisphere 22.0
Putamen
nTPM: 0.4
2647 Male, age 75, left hemisphere 2.6
1937 Female, age 91, right hemisphere 0.6
1829 Male, age 74, unknown 0.0
1838 Male, age 80, right hemisphere 0.0
2466 Female, age 79, unknown 0.0
2482 Female, age 94, left hemisphere 0.0
2489 Female, age 72, unknown 0.0
Septal nuclei
nTPM: 15.5
2031 Female, age 72, unknown 38.8
2009 Female, age 91, both hemispheres 33.5
2629 Female, age 94, right hemisphere 22.5
1960 Male, age 74, unknown 13.8
2059 Female, age 85, both hemispheres 0.0
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 20.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 19.9
Samples: 246

Max nTPM: 146.4
Min nTPM: 3.2
Std nTPM: 12.3
Median nTPM: 18.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 146.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 56.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 42.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 41.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 40.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 40.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 40.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 39.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 38.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 36.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 36.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 20.2
Samples: 246

Max nTPM: 42.2
Min nTPM: 2.7
Std nTPM: 8.1
Median nTPM: 20.8
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 42.2
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 38.9
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 36.4
GTEX-14PN4-0011-R6b-SM-69LQU 50-59 years, male 36.4
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 36.2
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 36.0
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 35.9
GTEX-1H1DG-0011-R6a-SM-A9SK8 70-79 years, male 35.9
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 35.0
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 34.8
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 34.2
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Brain - Putamen (basal ganglia)
Average nTPM: 16.3
Samples: 205

Max nTPM: 86.9
Min nTPM: 2.4
Std nTPM: 8.7
Median nTPM: 15.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 86.9
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 38.9
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 34.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 32.6
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 32.1
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 31.2
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 30.3
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 30.0
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 29.3
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 28.6
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 28.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 102.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 41.0
FF:10164-103B2 76 years, female 41.0
Globus pallidus
Scaled Tags Per Million: 14.7
FF:10175-103C4 60 years, female 14.9
FF:10161-103A8 76 years, female 14.4
Nucleus accumbens
Scaled Tags Per Million: 102.5
FF:10037-101F1 23-56 years, mixed 102.5
Putamen
Scaled Tags Per Million: 43.0
FF:10176-103C5 60 years, female 43.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 10.4
Pig sample Sample description nTPM
Caudate
nTPM: 3.3
Samples: 4

Max nTPM: 3.7
Min nTPM: 2.7
Sample A Female 3.6
Sample B Female 3.7
Sample C Male 3.2
Sample D Male 2.7
Putamen
nTPM: 2.9
Samples: 4

Max nTPM: 3.8
Min nTPM: 2.1
Sample A Female 3.8
Sample B Female 2.1
Sample C Male 3.0
Sample D Male 2.6
Septum
nTPM: 10.4
Samples: 4

Max nTPM: 24.8
Min nTPM: 5.3
Sample A Female 5.6
Sample B Female 5.9
Sample C Male 24.8
Sample D Male 5.3
Ventral pallidum
nTPM: 6.5
Samples: 4

Max nTPM: 16.5
Min nTPM: 2.8
Sample A Female 3.5
Sample B Female 2.8
Sample C Male 16.5
Sample D Male 3.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 42.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 27.1
Samples: 4

Max nTPM: 29.3
Min nTPM: 24.5
Sample A Male 28.3
Sample B Male 29.3
Sample C Female 24.5
Sample D Female 26.1
Septum
nTPM: 42.8
Samples: 4

Max nTPM: 57.8
Min nTPM: 30.9
Sample A Male 57.8
Sample B Male 30.9
Sample C Female 37.3
Sample D Female 45.3
Ventral forebrain
nTPM: 32.1
Samples: 4

Max nTPM: 47.4
Min nTPM: 25.9
Sample A Male 27.5
Sample B Male 47.4
Sample C Female 25.9
Sample D Female 27.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.3
75042242 Antisense, RP_051219_02_C11, Mouse strain C57BL/6J (56 days, male) 6.1
74512027 Antisense, RP_060220_03_D04, Mouse strain C57BL/6J (56 days, male) 3.8
71210877 Antisense, RP_050810_04_G02, Mouse strain C57BL/6J (56 days, male) 3.0
74000546 Antisense, RP_051219_02_C11, Mouse strain C57BL/6J (56 days, male) 2.1
Pallidum
Expression energy: 6.5
74512027 Antisense, RP_060220_03_D04, Mouse strain C57BL/6J (56 days, male) 7.3
75042242 Antisense, RP_051219_02_C11, Mouse strain C57BL/6J (56 days, male) 7.2
71210877 Antisense, RP_050810_04_G02, Mouse strain C57BL/6J (56 days, male) 5.0
74000546 Antisense, RP_051219_02_C11, Mouse strain C57BL/6J (56 days, male) 3.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.