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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:71.4 nTPM
HPA:71.4 nTPM
GTEx:74.6 nTPM
FANTOM5:80.2 Scaled Tags Per Million
Pig:100.2 nTPM
Mouse:214.7 nTPM
Allen mouse:15.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 71.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 66.1
2019 Male, age 18, unknown 76.8
2411 Female, age 72, unknown 70.3
1827 Male, age 72, unknown 67.5
1870 Female, age 42, unknown 66.5
1833 Male, age 53, unknown 65.6
2219 Male, age 76, both hemispheres 64.4
1830 Male, age 51, unknown 64.2
2828 Female, age 72, unknown 64.2
2666 Male, age 74, left hemisphere 61.9
2586 Male, age 75, left hemisphere 60.0
Dorsal raphe nucleus
nTPM: 68.6
2298 Female, age 72, unknown 72.5
1828 Male, age 53, unknown 70.7
2750 Male, age 76, both hemispheres 68.0
2047 Male, age 72, unknown 67.4
2016 Female, age 72, unknown 64.3
Inferior colliculus
nTPM: 68.1
2097 Female, age 72, unknown 72.3
1890 Male, age 53, unknown 68.5
1848 Female, age 42, unknown 68.0
2849 Male, age 72, unknown 63.7
Median raphe nucleus
nTPM: 65.1
2220 Male, age 76, midline 65.1
Pedunculopontine tegmental nucleus
nTPM: 70.5
1921 Female, age 85, both hemispheres 71.1
2334 Male, age 80, both hemispheres 71.0
2338 Male, age 61, both hemispheres 69.5
Periaquaductal grey, anterior
nTPM: 65.5
1947 Male, age 18, unknown 66.3
1795 Male, age 51, unknown 65.5
2502 Female, age 75, unknown 64.6
Periaquaductal grey, dorsal
nTPM: 63.1
2850 Male, age 76, both hemispheres 65.7
2464 Female, age 72, unknown 64.2
1840 Male, age 53, unknown 61.8
1831 Male, age 72, unknown 60.7
Periaquaductal grey, lateral
nTPM: 66.1
2272 Male, age 74, both hemispheres 72.5
2140 Male, age 76, both hemispheres 63.6
2053 Male, age 18, unknown 62.3
Pretectal area
nTPM: 71.4
2007 Male, age 72, unknown 79.3
1817 Female, age 42, unknown 78.9
1816 Male, age 51, unknown 75.5
2667 Female, age 75, unknown 75.4
1944 Female, age 72, unknown 73.3
1815 Male, age 53, unknown 72.0
2273 Male, age 74, both hemispheres 71.0
2224 Female, age 72, unknown 69.3
2316 Male, age 76, right hemisphere 67.0
2825 Male, age 18, unknown 62.9
2407 Male, age 75, both hemispheres 60.6
Red nucleus
nTPM: 68.4
1821 Female, age 72, unknown 76.4
2785 Male, age 18, unknown 74.0
2503 Female, age 72, unknown 71.6
2823 Male, age 76, right hemisphere 70.2
1954 Female, age 42, unknown 68.9
1865 Male, age 51, unknown 68.7
2725 Female, age 75, unknown 68.0
2769 Male, age 72, unknown 67.6
2227 Male, age 72, unknown 67.2
1904 Male, age 53, unknown 67.0
2588 Male, age 74, left hemisphere 60.8
2584 Male, age 75, left hemisphere 59.9
Substantia nigra
nTPM: 68.0
1889 Female, age 72, unknown 74.6
1916 Female, age 42, unknown 70.8
1941 Male, age 53, unknown 70.1
2241 Male, age 72, unknown 70.0
1851 Male, age 51, unknown 69.8
2409 Female, age 72, unknown 68.0
2590 Female, age 75, unknown 66.1
2665 Male, age 74, both hemispheres 65.5
2699 Male, age 18, unknown 64.3
2583 Male, age 75, right hemisphere 61.0
Superior colliculus
nTPM: 66.5
2087 Female, age 72, unknown 71.0
2587 Male, age 74, left hemisphere 69.4
1895 Male, age 76, right hemisphere 68.8
1796 Male, age 53, unknown 67.2
1913 Female, age 42, unknown 67.0
2261 Male, age 18, unknown 66.1
1839 Male, age 51, unknown 65.9
1995 Male, age 72, unknown 65.4
2668 Female, age 75, unknown 65.2
2664 Male, age 75, both hemispheres 58.7
Ventral tegmental area
nTPM: 66.4
2410 Female, age 72, unknown 73.5
2218 Male, age 76, both hemispheres 67.8
1915 Female, age 42, unknown 66.6
2223 Female, age 72, unknown 65.6
2021 Male, age 53, unknown 62.5
1942 Male, age 51, unknown 62.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 74.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 74.6
Samples: 139

Max nTPM: 111.6
Min nTPM: 39.4
Std nTPM: 14.7
Median nTPM: 72.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 111.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 110.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 109.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 107.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 105.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 104.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 103.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 102.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 101.5
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 99.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 98.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 80.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 80.2
FF:10158-103A5 76 years, female 80.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 100.2
Pig sample Sample description nTPM
Midbrain
nTPM: 93.4
Samples: 4

Max nTPM: 108.6
Min nTPM: 79.6
Sample A Female 108.6
Sample B Female 79.6
Sample C Male 97.5
Sample D Male 87.9
Periaqueductal gray
nTPM: 71.1
Samples: 3

Max nTPM: 74.7
Min nTPM: 65.4
Sample B Female 74.7
Sample C Male 73.3
Sample D Male 65.4
Substantia nigra
nTPM: 83.3
Samples: 4

Max nTPM: 112.2
Min nTPM: 67.1
Sample A Female 112.2
Sample B Female 67.1
Sample C Male 79.5
Sample D Male 74.2
Superior colliculi
nTPM: 100.2
Samples: 4

Max nTPM: 124.5
Min nTPM: 75.8
Sample A Female 124.5
Sample B Female 75.8
Sample C Male 109.7
Sample D Male 90.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 214.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 214.7
Samples: 4

Max nTPM: 233.2
Min nTPM: 198.7
Sample A Male 233.2
Sample B Male 212.4
Sample C Female 198.7
Sample D Female 214.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.3
686214 Antisense, RP_040916_01_B12, Mouse strain C57BL/6J (56 days, male) 15.8
74658140 Antisense, RP_060220_02_C09, Mouse strain C57BL/6J (56 days, male) 14.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.