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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.5 nTPM
HPA:12.5 nTPM
GTEx:13.3 nTPM
FANTOM5:9.1 Scaled Tags Per Million
Pig:6.9 nTPM
Mouse:10.0 nTPM
Allen mouse:1.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 12.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 12.3
2846 Female, age 79, unknown 13.5
1857 Female, age 85, left hemisphere 12.9
1854 Male, age 80, left hemisphere 12.6
2481 Female, age 94, left hemisphere 12.5
1781 Male, age 74, unknown 12.0
2289 Male, age 61, right hemisphere 11.8
2288 Male, age 75, left hemisphere 11.7
2290 Female, age 72, unknown 11.7
Claustrum
nTPM: 11.9
2198 Male, age 80, both hemispheres 12.7
2645 Female, age 72, unknown 12.3
2196 Female, age 79, unknown 12.2
2292 Female, age 85, both hemispheres 12.2
1956 Male, age 74, unknown 11.8
2392 Female, age 94, both hemispheres 11.8
2568 Male, age 61, both hemispheres 11.4
2284 Female, age 91, both hemispheres 11.3
2491 Male, age 75, both hemispheres 11.2
Globus pallidus, externus
nTPM: 12.1
2772 Female, age 79, unknown 13.1
2395 Male, age 75, both hemispheres 12.8
1996 Male, age 80, right hemisphere 11.8
2646 Male, age 61, right hemisphere 11.5
2567 Female, age 72, unknown 11.3
Globus pallidus, internus
nTPM: 11.6
2483 Female, age 94, right hemisphere 11.9
1818 Male, age 74, unknown 11.8
2287 Male, age 75, right hemisphere 11.8
2037 Male, age 80, right hemisphere 11.7
2566 Female, age 72, unknown 11.6
2778 Female, age 91, both hemispheres 11.4
2111 Female, age 85, right hemisphere 11.3
Nucleus accumbens
nTPM: 12.0
1856 Female, age 91, right hemisphere 12.5
2286 Male, age 75, left hemisphere 12.4
1783 Male, age 74, unknown 12.2
2698 Female, age 72, unknown 12.2
2824 Male, age 61, right hemisphere 12.1
2732 Male, age 80, right hemisphere 12.0
2391 Female, age 94, left hemisphere 11.6
1806 Female, age 85, left hemisphere 11.5
Nucleus basalis of Meynert
nTPM: 11.8
2821 Male, age 75, both hemispheres 12.2
2393 Male, age 80, right hemisphere 12.1
2484 Female, age 94, left hemisphere 11.5
2569 Male, age 61, both hemispheres 11.5
Nucleus of the diagonal band
nTPM: 12.5
1812 Female, age 91, both hemispheres 13.5
2775 Male, age 80, right hemisphere 12.9
2029 Male, age 61, right hemisphere 12.6
2195 Female, age 85, both hemispheres 11.9
1979 Male, age 74, unknown 11.6
Olfactory tubercle
nTPM: 12.5
1998 Female, age 91, both hemispheres 13.5
1846 Male, age 80, right hemisphere 12.7
2487 Female, age 94, left hemisphere 12.1
2856 Male, age 75, right hemisphere 11.8
Putamen
nTPM: 12.0
2466 Female, age 79, unknown 12.5
2647 Male, age 75, left hemisphere 12.5
1829 Male, age 74, unknown 12.0
2482 Female, age 94, left hemisphere 11.9
1937 Female, age 91, right hemisphere 11.7
2489 Female, age 72, unknown 11.7
1838 Male, age 80, right hemisphere 11.6
Septal nuclei
nTPM: 12.1
2031 Female, age 72, unknown 13.4
1960 Male, age 74, unknown 13.1
2009 Female, age 91, both hemispheres 12.2
2394 Male, age 61, left hemisphere 11.6
2629 Female, age 94, right hemisphere 11.6
2059 Female, age 85, both hemispheres 11.5
2199 Male, age 80, right hemisphere 11.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 13.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 12.1
Samples: 246

Max nTPM: 24.5
Min nTPM: 4.3
Std nTPM: 3.4
Median nTPM: 11.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 24.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 23.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 21.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 20.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 20.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 20.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 19.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 19.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 18.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 18.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 18.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 11.9
Samples: 246

Max nTPM: 32.3
Min nTPM: 2.8
Std nTPM: 4.2
Median nTPM: 10.8
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 32.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 28.0
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 26.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 26.0
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 25.6
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 24.7
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 24.2
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 23.1
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 21.6
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 21.6
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 20.9
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Brain - Putamen (basal ganglia)
Average nTPM: 13.3
Samples: 205

Max nTPM: 35.3
Min nTPM: 5.0
Std nTPM: 3.6
Median nTPM: 13.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 35.3
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 25.9
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 22.1
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 22.0
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 21.8
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 21.1
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 20.9
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 19.7
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 19.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 18.9
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 18.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 9.1
FF:10164-103B2 76 years, female 9.1
Globus pallidus
Scaled Tags Per Million: 7.3
FF:10175-103C4 60 years, female 9.4
FF:10161-103A8 76 years, female 5.2
Nucleus accumbens
Scaled Tags Per Million: 7.1
FF:10037-101F1 23-56 years, mixed 7.1
Putamen
Scaled Tags Per Million: 6.7
FF:10176-103C5 60 years, female 6.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 6.9
Pig sample Sample description nTPM
Caudate
nTPM: 6.8
Samples: 4

Max nTPM: 7.7
Min nTPM: 5.4
Sample A Female 5.4
Sample B Female 6.7
Sample C Male 7.7
Sample D Male 7.2
Putamen
nTPM: 6.9
Samples: 4

Max nTPM: 9.7
Min nTPM: 5.6
Sample A Female 5.6
Sample B Female 5.8
Sample C Male 9.7
Sample D Male 6.5
Septum
nTPM: 5.7
Samples: 4

Max nTPM: 7.4
Min nTPM: 4.9
Sample A Female 5.2
Sample B Female 4.9
Sample C Male 7.4
Sample D Male 5.3
Ventral pallidum
nTPM: 6.3
Samples: 4

Max nTPM: 7.5
Min nTPM: 5.2
Sample A Female 5.3
Sample B Female 7.2
Sample C Male 7.5
Sample D Male 5.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 10.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 6.6
Samples: 4

Max nTPM: 8.7
Min nTPM: 5.6
Sample A Male 6.1
Sample B Male 8.7
Sample C Female 5.6
Sample D Female 6.1
Septum
nTPM: 10.0
Samples: 4

Max nTPM: 11.4
Min nTPM: 8.7
Sample A Male 11.4
Sample B Male 10.7
Sample C Female 8.7
Sample D Female 9.1
Ventral forebrain
nTPM: 9.7
Samples: 4

Max nTPM: 11.5
Min nTPM: 7.7
Sample A Male 10.2
Sample B Male 7.7
Sample C Female 11.5
Sample D Female 9.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.9
68545342 Antisense, RP_050118_03_C06, Mouse strain C57BL/6J (56 days, male) 0.9
Pallidum
Expression energy: 1.2
68545342 Antisense, RP_050118_03_C06, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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