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CD46
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.6 nTPM
HPA:33.6 nTPM
GTEx:39.1 nTPM
FANTOM5:184.3 Scaled Tags Per Million
Mouse:0.6 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.0
2411 Female, age 72, unknown 38.5
1870 Female, age 42, unknown 33.6
2019 Male, age 18, unknown 32.8
2828 Female, age 72, unknown 32.8
1827 Male, age 72, unknown 31.5
1830 Male, age 51, unknown 31.5
1833 Male, age 53, unknown 29.7
2666 Male, age 74, left hemisphere 29.2
2219 Male, age 76, both hemispheres 28.0
2586 Male, age 75, left hemisphere 21.9
Dorsal raphe nucleus
nTPM: 31.5
2750 Male, age 76, both hemispheres 34.2
1828 Male, age 53, unknown 32.3
2016 Female, age 72, unknown 31.1
2298 Female, age 72, unknown 30.3
2047 Male, age 72, unknown 29.4
Inferior colliculus
nTPM: 29.3
1890 Male, age 53, unknown 30.6
2097 Female, age 72, unknown 30.4
1848 Female, age 42, unknown 29.4
2849 Male, age 72, unknown 26.7
Median raphe nucleus
nTPM: 31.5
2220 Male, age 76, midline 31.5
Pedunculopontine tegmental nucleus
nTPM: 33.6
2334 Male, age 80, both hemispheres 35.0
2338 Male, age 61, both hemispheres 34.2
1921 Female, age 85, both hemispheres 31.6
Periaquaductal grey, anterior
nTPM: 30.9
2502 Female, age 75, unknown 34.6
1947 Male, age 18, unknown 29.9
1795 Male, age 51, unknown 28.3
Periaquaductal grey, dorsal
nTPM: 28.9
1831 Male, age 72, unknown 31.8
2464 Female, age 72, unknown 30.0
2850 Male, age 76, both hemispheres 27.9
1840 Male, age 53, unknown 26.0
Periaquaductal grey, lateral
nTPM: 29.8
2272 Male, age 74, both hemispheres 31.8
2053 Male, age 18, unknown 30.2
2140 Male, age 76, both hemispheres 27.3
Pretectal area
nTPM: 30.5
1815 Male, age 53, unknown 32.0
2007 Male, age 72, unknown 31.9
1817 Female, age 42, unknown 31.5
2667 Female, age 75, unknown 31.0
1816 Male, age 51, unknown 30.9
2273 Male, age 74, both hemispheres 30.9
2316 Male, age 76, right hemisphere 30.6
2825 Male, age 18, unknown 30.4
2224 Female, age 72, unknown 29.9
1944 Female, age 72, unknown 29.6
2407 Male, age 75, both hemispheres 26.9
Red nucleus
nTPM: 31.7
2503 Female, age 72, unknown 36.0
1821 Female, age 72, unknown 33.7
2823 Male, age 76, right hemisphere 33.6
1865 Male, age 51, unknown 32.5
2588 Male, age 74, left hemisphere 32.4
1954 Female, age 42, unknown 32.2
1904 Male, age 53, unknown 32.1
2769 Male, age 72, unknown 31.5
2785 Male, age 18, unknown 31.4
2227 Male, age 72, unknown 30.9
2725 Female, age 75, unknown 29.3
2584 Male, age 75, left hemisphere 25.0
Substantia nigra
nTPM: 32.2
2409 Female, age 72, unknown 37.8
2665 Male, age 74, both hemispheres 36.1
1851 Male, age 51, unknown 33.7
1889 Female, age 72, unknown 33.0
1941 Male, age 53, unknown 31.8
2590 Female, age 75, unknown 31.5
1916 Female, age 42, unknown 31.2
2241 Male, age 72, unknown 31.2
2699 Male, age 18, unknown 28.9
2583 Male, age 75, right hemisphere 26.8
Superior colliculus
nTPM: 30.2
2587 Male, age 74, left hemisphere 34.6
1913 Female, age 42, unknown 33.5
1895 Male, age 76, right hemisphere 32.3
2261 Male, age 18, unknown 30.9
2087 Female, age 72, unknown 30.6
1995 Male, age 72, unknown 30.4
1796 Male, age 53, unknown 30.0
1839 Male, age 51, unknown 29.5
2668 Female, age 75, unknown 28.5
2664 Male, age 75, both hemispheres 21.7
Ventral tegmental area
nTPM: 32.5
2410 Female, age 72, unknown 37.0
2218 Male, age 76, both hemispheres 33.5
2021 Male, age 53, unknown 31.7
1942 Male, age 51, unknown 31.1
1915 Female, age 42, unknown 30.8
2223 Female, age 72, unknown 30.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.1
Samples: 139

Max nTPM: 92.1
Min nTPM: 18.1
Std nTPM: 10.7
Median nTPM: 38.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 92.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 73.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 72.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 70.9
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 62.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 58.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 57.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 57.2
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 55.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 55.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 54.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 184.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 184.3
FF:10158-103A5 76 years, female 184.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.6
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.5
Sample A Male 0.8
Sample B Male 0.5
Sample C Female 0.5
Sample D Female 0.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
73512566 Antisense, RP_051012_02_G07, Mouse strain C57BL/6J (56 days, male) 0.0

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