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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.6 nTPM
HPA:31.6 nTPM
GTEx:24.1 nTPM
FANTOM5:21.4 Scaled Tags Per Million
Mouse:26.7 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.7
2666 Male, age 74, left hemisphere 29.0
1870 Female, age 42, unknown 27.8
2019 Male, age 18, unknown 27.7
1830 Male, age 51, unknown 27.5
2828 Female, age 72, unknown 27.1
1833 Male, age 53, unknown 26.3
2411 Female, age 72, unknown 25.7
1827 Male, age 72, unknown 25.6
2586 Male, age 75, left hemisphere 25.2
2219 Male, age 76, both hemispheres 25.1
Dorsal raphe nucleus
nTPM: 27.5
2016 Female, age 72, unknown 28.4
2298 Female, age 72, unknown 28.1
2750 Male, age 76, both hemispheres 27.4
1828 Male, age 53, unknown 27.0
2047 Male, age 72, unknown 26.4
Inferior colliculus
nTPM: 27.2
1890 Male, age 53, unknown 28.1
2097 Female, age 72, unknown 27.8
2849 Male, age 72, unknown 26.6
1848 Female, age 42, unknown 26.2
Median raphe nucleus
nTPM: 27.4
2220 Male, age 76, midline 27.4
Pedunculopontine tegmental nucleus
nTPM: 31.6
2338 Male, age 61, both hemispheres 40.7
2334 Male, age 80, both hemispheres 29.1
1921 Female, age 85, both hemispheres 25.0
Periaquaductal grey, anterior
nTPM: 26.3
1795 Male, age 51, unknown 26.9
1947 Male, age 18, unknown 26.4
2502 Female, age 75, unknown 25.5
Periaquaductal grey, dorsal
nTPM: 27.7
1831 Male, age 72, unknown 29.6
2850 Male, age 76, both hemispheres 28.3
2464 Female, age 72, unknown 26.6
1840 Male, age 53, unknown 26.4
Periaquaductal grey, lateral
nTPM: 27.8
2053 Male, age 18, unknown 27.9
2272 Male, age 74, both hemispheres 27.9
2140 Male, age 76, both hemispheres 27.7
Pretectal area
nTPM: 26.9
2316 Male, age 76, right hemisphere 28.2
2224 Female, age 72, unknown 27.8
1817 Female, age 42, unknown 27.4
2407 Male, age 75, both hemispheres 27.2
2007 Male, age 72, unknown 27.1
1944 Female, age 72, unknown 27.0
1815 Male, age 53, unknown 26.7
2273 Male, age 74, both hemispheres 26.6
2825 Male, age 18, unknown 26.1
1816 Male, age 51, unknown 26.0
2667 Female, age 75, unknown 25.9
Red nucleus
nTPM: 27.8
2725 Female, age 75, unknown 29.9
1865 Male, age 51, unknown 29.4
1821 Female, age 72, unknown 29.0
1904 Male, age 53, unknown 28.9
2823 Male, age 76, right hemisphere 28.4
2503 Female, age 72, unknown 27.8
1954 Female, age 42, unknown 27.6
2785 Male, age 18, unknown 27.4
2227 Male, age 72, unknown 27.2
2769 Male, age 72, unknown 27.0
2584 Male, age 75, left hemisphere 25.7
2588 Male, age 74, left hemisphere 25.7
Substantia nigra
nTPM: 27.7
2699 Male, age 18, unknown 29.8
2665 Male, age 74, both hemispheres 29.1
2590 Female, age 75, unknown 28.0
2583 Male, age 75, right hemisphere 27.9
2241 Male, age 72, unknown 27.8
1851 Male, age 51, unknown 27.5
2409 Female, age 72, unknown 27.4
1916 Female, age 42, unknown 27.2
1941 Male, age 53, unknown 26.4
1889 Female, age 72, unknown 26.3
Superior colliculus
nTPM: 26.8
1913 Female, age 42, unknown 29.5
1995 Male, age 72, unknown 28.7
2587 Male, age 74, left hemisphere 27.6
2668 Female, age 75, unknown 26.7
1796 Male, age 53, unknown 26.4
2087 Female, age 72, unknown 26.4
1839 Male, age 51, unknown 26.0
1895 Male, age 76, right hemisphere 26.0
2664 Male, age 75, both hemispheres 25.8
2261 Male, age 18, unknown 25.1
Ventral tegmental area
nTPM: 28.1
2021 Male, age 53, unknown 30.6
2218 Male, age 76, both hemispheres 28.9
1915 Female, age 42, unknown 27.6
2223 Female, age 72, unknown 27.6
2410 Female, age 72, unknown 27.4
1942 Male, age 51, unknown 26.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.1
Samples: 139

Max nTPM: 82.0
Min nTPM: 5.8
Std nTPM: 13.7
Median nTPM: 19.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 82.0
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 70.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 69.6
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 65.5
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 59.9
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 57.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 53.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 51.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 49.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 47.2
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 47.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.4
FF:10158-103A5 76 years, female 21.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 26.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.7
Samples: 4

Max nTPM: 30.4
Min nTPM: 24.9
Sample A Male 30.4
Sample B Male 24.9
Sample C Female 26.5
Sample D Female 25.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
69059818 Antisense, RP_050317_04_B02, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

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