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PHF19
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.3 nTPM
HPA:24.3 nTPM
GTEx:18.5 nTPM
FANTOM5:5.1 Scaled Tags Per Million
Pig:7.6 nTPM
Mouse:0.5 nTPM
Allen mouse:0.1 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 24.3
Sample id Sample description nTPM
Hippocampus
nTPM: 21.7
1911 Female, age 85, right hemisphere 23.0
2529 Female, age 94, left hemisphere 22.7
2621 Female, age 67, right hemisphere 22.2
2148 Female, age 91, left hemisphere 21.6
1898 Male, age 80, left hemisphere 20.4
1855 Male, age 76, left hemisphere 20.2
Dentate gyrus
nTPM: 22.1
2530 Female, age 94, left hemisphere 24.4
2531 Female, age 67, both hemispheres 23.9
2528 Male, age 74, both hemispheres 22.5
2010 Male, age 76, both hemispheres 21.1
2246 Female, age 85, both hemispheres 21.0
1927 Female, age 91, both hemispheres 19.9
Entorhinal gyrus
nTPM: 23.0
2117 Female, age 91, right hemisphere 25.7
2686 Male, age 75, right hemisphere 24.0
2764 Male, age 80, right hemisphere 23.6
2613 Female, age 94, left hemisphere 22.4
1938 Female, age 85, left hemisphere 21.6
1787 Male, age 76, left hemisphere 20.7
Hippocampus, CA1
nTPM: 20.2
2082 Female, age 91, right hemisphere 22.1
1873 Female, age 85, both hemispheres 21.4
2527 Male, age 74, both hemispheres 21.4
2045 Male, age 76, both hemispheres 18.1
2749 Male, age 80, left hemisphere 17.9
Hippocampus, CA2
nTPM: 21.6
2437 Female, age 94, left hemisphere 22.7
1940 Female, age 85, left hemisphere 22.4
1963 Male, age 80, left hemisphere 22.1
2249 Male, age 74, both hemispheres 22.0
2113 Female, age 91, right hemisphere 21.1
1892 Male, age 76, both hemispheres 19.1
Hippocampus, CA3
nTPM: 22.1
1891 Female, age 85, both hemispheres 25.6
2620 Female, age 94, left hemisphere 24.2
2861 Female, age 67, both hemispheres 23.9
1867 Male, age 76, both hemispheres 20.2
2137 Male, age 80, left hemisphere 19.4
2436 Male, age 74, both hemispheres 19.4
Parahippocampal cortex
nTPM: 21.6
2692 Male, age 74, both hemispheres 24.6
1990 Female, age 91, right hemisphere 23.3
2532 Female, age 72, left hemisphere 22.0
2622 Female, age 67, right hemisphere 21.5
2018 Male, age 76, both hemispheres 21.4
1933 Female, age 85, both hemispheres 20.9
1850 Male, age 80, both hemispheres 20.6
2693 Female, age 94, both hemispheres 20.6
2245 Female, age 91, both hemispheres 20.5
2250 Female, age 67, right hemisphere 20.3
Perirhinal gyrus
nTPM: 19.4
1841 Female, age 85, right hemisphere 19.9
2848 Male, age 76, right hemisphere 19.7
2521 Female, age 94, right hemisphere 19.2
1847 Female, age 91, left hemisphere 19.1
1794 Male, age 80, right hemisphere 18.9
Subiculum
nTPM: 24.3
2042 Male, age 76, both hemispheres 28.3
1901 Male, age 80, both hemispheres 25.7
2619 Male, age 74, both hemispheres 24.0
2438 Female, age 94, left hemisphere 23.6
1977 Female, age 85, both hemispheres 23.0
2729 Female, age 91, right hemisphere 21.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 18.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 18.5
Samples: 197

Max nTPM: 46.4
Min nTPM: 8.7
Std nTPM: 6.4
Median nTPM: 17.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 46.4
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 41.8
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 39.3
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 35.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 35.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 34.9
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 34.7
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 33.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 33.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 33.6
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 33.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 5.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 5.1
FF:10153-102I9 76 years, female 7.1
FF:10169-103B7 60 years, female 3.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 7.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 6.6
Samples: 4

Max nTPM: 6.8
Min nTPM: 6.3
Sample A Female 6.3
Sample B Female 6.5
Sample C Male 6.7
Sample D Male 6.8
Entorhinal cortex
nTPM: 6.4
Samples: 4

Max nTPM: 7.0
Min nTPM: 6.0
Sample A Female 6.6
Sample B Female 6.0
Sample C Male 7.0
Sample D Male 6.0
Subiculum
nTPM: 7.4
Samples: 4

Max nTPM: 7.7
Min nTPM: 6.9
Sample A Female 7.5
Sample B Female 7.7
Sample C Male 7.4
Sample D Male 6.9
Ventral hippocampus
nTPM: 7.6
Samples: 4

Max nTPM: 9.4
Min nTPM: 6.9
Sample A Female 6.9
Sample B Female 7.3
Sample C Male 9.4
Sample D Male 6.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 0.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 0.4
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.3
Sample A Male 0.3
Sample B Male 0.3
Sample C Female 0.3
Sample D Female 0.7
Hippocampal formation
nTPM: 0.5
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.2
Sample A Male 0.4
Sample B Male 0.3
Sample C Female 0.2
Sample D Female 1.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
68157404 Antisense, RP_041116_02_E09, Mouse strain C57BL/6J (56 days, male) 0.1

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