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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:144.7 nTPM
HPA:144.7 nTPM
GTEx:120.6 nTPM
FANTOM5:79.0 Scaled Tags Per Million
Pig:52.1 nTPM
Mouse:246.3 nTPM
Allen mouse:2.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041510Antibody HPA041600
Glial cells Not detectedLow
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 144.7
Sample id Sample description nTPM
Hippocampus
nTPM: 140.0
1898 Male, age 80, left hemisphere 151.5
2621 Female, age 67, right hemisphere 142.1
1855 Male, age 76, left hemisphere 138.1
2529 Female, age 94, left hemisphere 138.0
2148 Female, age 91, left hemisphere 135.6
1911 Female, age 85, right hemisphere 134.9
Dentate gyrus
nTPM: 138.8
1927 Female, age 91, both hemispheres 144.3
2010 Male, age 76, both hemispheres 143.0
2530 Female, age 94, left hemisphere 140.2
2246 Female, age 85, both hemispheres 136.7
2528 Male, age 74, both hemispheres 135.3
2531 Female, age 67, both hemispheres 133.1
Entorhinal gyrus
nTPM: 137.4
1938 Female, age 85, left hemisphere 144.2
2764 Male, age 80, right hemisphere 141.4
1787 Male, age 76, left hemisphere 139.7
2613 Female, age 94, left hemisphere 134.3
2117 Female, age 91, right hemisphere 132.9
2686 Male, age 75, right hemisphere 131.9
Hippocampus, CA1
nTPM: 143.5
2749 Male, age 80, left hemisphere 159.6
1873 Female, age 85, both hemispheres 142.2
2527 Male, age 74, both hemispheres 141.6
2045 Male, age 76, both hemispheres 139.3
2082 Female, age 91, right hemisphere 134.9
Hippocampus, CA2
nTPM: 141.1
1892 Male, age 76, both hemispheres 148.6
1963 Male, age 80, left hemisphere 146.9
2249 Male, age 74, both hemispheres 144.5
2437 Female, age 94, left hemisphere 138.2
1940 Female, age 85, left hemisphere 135.4
2113 Female, age 91, right hemisphere 133.3
Hippocampus, CA3
nTPM: 140.8
2137 Male, age 80, left hemisphere 146.9
2436 Male, age 74, both hemispheres 143.5
1867 Male, age 76, both hemispheres 143.0
1891 Female, age 85, both hemispheres 138.3
2620 Female, age 94, left hemisphere 137.0
2861 Female, age 67, both hemispheres 136.2
Parahippocampal cortex
nTPM: 138.3
1850 Male, age 80, both hemispheres 147.0
1990 Female, age 91, right hemisphere 141.7
1933 Female, age 85, both hemispheres 141.3
2250 Female, age 67, right hemisphere 139.4
2245 Female, age 91, both hemispheres 138.8
2532 Female, age 72, left hemisphere 138.7
2018 Male, age 76, both hemispheres 136.8
2693 Female, age 94, both hemispheres 134.1
2622 Female, age 67, right hemisphere 133.9
2692 Male, age 74, both hemispheres 131.2
Perirhinal gyrus
nTPM: 144.7
1847 Female, age 91, left hemisphere 152.6
1794 Male, age 80, right hemisphere 148.4
1841 Female, age 85, right hemisphere 144.8
2521 Female, age 94, right hemisphere 140.6
2848 Male, age 76, right hemisphere 136.9
Subiculum
nTPM: 137.0
1901 Male, age 80, both hemispheres 142.6
1977 Female, age 85, both hemispheres 142.5
2619 Male, age 74, both hemispheres 136.1
2438 Female, age 94, left hemisphere 135.9
2729 Female, age 91, right hemisphere 132.4
2042 Male, age 76, both hemispheres 132.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 120.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 120.6
Samples: 197

Max nTPM: 308.9
Min nTPM: 50.9
Std nTPM: 40.5
Median nTPM: 114.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 308.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 246.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 237.9
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 222.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 219.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 215.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 211.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 207.9
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 204.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 203.0
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 187.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 79.0
FF:10169-103B7 60 years, female 96.2
FF:10153-102I9 76 years, female 61.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 52.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 52.1
Samples: 4

Max nTPM: 74.3
Min nTPM: 38.3
Sample A Female 74.3
Sample B Female 56.6
Sample C Male 38.3
Sample D Male 39.0
Entorhinal cortex
nTPM: 39.0
Samples: 4

Max nTPM: 51.3
Min nTPM: 29.1
Sample A Female 37.3
Sample B Female 51.3
Sample C Male 38.4
Sample D Male 29.1
Subiculum
nTPM: 36.8
Samples: 4

Max nTPM: 50.5
Min nTPM: 30.4
Sample A Female 50.5
Sample B Female 34.9
Sample C Male 30.4
Sample D Male 31.2
Ventral hippocampus
nTPM: 48.3
Samples: 4

Max nTPM: 59.1
Min nTPM: 33.0
Sample A Female 59.1
Sample B Female 33.0
Sample C Male 50.8
Sample D Male 50.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 246.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 235.1
Samples: 4

Max nTPM: 245.2
Min nTPM: 224.8
Sample A Male 230.9
Sample B Male 224.8
Sample C Female 239.6
Sample D Female 245.2
Hippocampal formation
nTPM: 246.3
Samples: 4

Max nTPM: 262.3
Min nTPM: 228.7
Sample A Male 262.3
Sample B Male 228.7
Sample C Female 242.5
Sample D Female 251.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.8
386020 Antisense, RP_040804_01_A08, Mouse strain C57BL/6J (56 days, male) 2.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.