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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:139.7 nTPM
HPA:139.7 nTPM
GTEx:119.1 nTPM
FANTOM5:47.8 Scaled Tags Per Million
Pig:57.8 nTPM
Mouse:216.9 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 139.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 134.5
2019 Male, age 18, unknown 142.4
1827 Male, age 72, unknown 137.5
2411 Female, age 72, unknown 135.2
2586 Male, age 75, left hemisphere 134.9
1870 Female, age 42, unknown 134.3
1833 Male, age 53, unknown 133.1
2828 Female, age 72, unknown 133.1
2219 Male, age 76, both hemispheres 132.8
1830 Male, age 51, unknown 130.9
2666 Male, age 74, left hemisphere 130.9
Dorsal raphe nucleus
nTPM: 135.9
2298 Female, age 72, unknown 140.8
1828 Male, age 53, unknown 137.5
2047 Male, age 72, unknown 135.4
2750 Male, age 76, both hemispheres 133.9
2016 Female, age 72, unknown 131.8
Inferior colliculus
nTPM: 139.0
2097 Female, age 72, unknown 144.6
1890 Male, age 53, unknown 141.1
1848 Female, age 42, unknown 137.3
2849 Male, age 72, unknown 133.1
Median raphe nucleus
nTPM: 132.5
2220 Male, age 76, midline 132.5
Pedunculopontine tegmental nucleus
nTPM: 134.9
1921 Female, age 85, both hemispheres 137.3
2334 Male, age 80, both hemispheres 135.7
2338 Male, age 61, both hemispheres 131.6
Periaquaductal grey, anterior
nTPM: 134.9
1795 Male, age 51, unknown 136.2
1947 Male, age 18, unknown 135.8
2502 Female, age 75, unknown 132.6
Periaquaductal grey, dorsal
nTPM: 132.7
1840 Male, age 53, unknown 134.1
2464 Female, age 72, unknown 133.0
1831 Male, age 72, unknown 132.7
2850 Male, age 76, both hemispheres 131.0
Periaquaductal grey, lateral
nTPM: 132.5
2272 Male, age 74, both hemispheres 135.3
2053 Male, age 18, unknown 131.6
2140 Male, age 76, both hemispheres 130.5
Pretectal area
nTPM: 139.7
2007 Male, age 72, unknown 148.6
1817 Female, age 42, unknown 148.2
1944 Female, age 72, unknown 148.0
1816 Male, age 51, unknown 146.9
2667 Female, age 75, unknown 141.7
1815 Male, age 53, unknown 139.4
2273 Male, age 74, both hemispheres 137.4
2224 Female, age 72, unknown 135.1
2316 Male, age 76, right hemisphere 131.8
2825 Male, age 18, unknown 131.5
2407 Male, age 75, both hemispheres 128.3
Red nucleus
nTPM: 136.1
1821 Female, age 72, unknown 142.9
2785 Male, age 18, unknown 140.3
2725 Female, age 75, unknown 139.3
1954 Female, age 42, unknown 136.3
2823 Male, age 76, right hemisphere 136.3
1865 Male, age 51, unknown 136.0
2769 Male, age 72, unknown 135.6
2503 Female, age 72, unknown 135.3
2227 Male, age 72, unknown 135.2
1904 Male, age 53, unknown 134.2
2588 Male, age 74, left hemisphere 131.9
2584 Male, age 75, left hemisphere 130.4
Substantia nigra
nTPM: 138.1
1889 Female, age 72, unknown 146.0
1916 Female, age 42, unknown 144.8
1851 Male, age 51, unknown 140.5
1941 Male, age 53, unknown 139.6
2665 Male, age 74, both hemispheres 137.5
2241 Male, age 72, unknown 137.1
2409 Female, age 72, unknown 136.2
2590 Female, age 75, unknown 133.8
2699 Male, age 18, unknown 133.7
2583 Male, age 75, right hemisphere 132.1
Superior colliculus
nTPM: 135.1
2087 Female, age 72, unknown 142.3
1895 Male, age 76, right hemisphere 139.4
1796 Male, age 53, unknown 137.2
2587 Male, age 74, left hemisphere 136.9
2668 Female, age 75, unknown 135.5
2261 Male, age 18, unknown 134.9
1913 Female, age 42, unknown 132.3
1839 Male, age 51, unknown 132.1
1995 Male, age 72, unknown 131.9
2664 Male, age 75, both hemispheres 128.4
Ventral tegmental area
nTPM: 135.6
2410 Female, age 72, unknown 142.5
1915 Female, age 42, unknown 138.7
2218 Male, age 76, both hemispheres 137.6
2223 Female, age 72, unknown 133.5
1942 Male, age 51, unknown 132.2
2021 Male, age 53, unknown 129.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 119.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 119.1
Samples: 139

Max nTPM: 230.4
Min nTPM: 54.4
Std nTPM: 28.1
Median nTPM: 114.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 230.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 207.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 201.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 186.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 176.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 174.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 174.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 172.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 170.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 170.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 169.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.8
FF:10158-103A5 76 years, female 47.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 57.8
Pig sample Sample description nTPM
Midbrain
nTPM: 47.9
Samples: 4

Max nTPM: 54.9
Min nTPM: 39.8
Sample A Female 54.9
Sample B Female 39.8
Sample C Male 51.7
Sample D Male 45.1
Periaqueductal gray
nTPM: 34.7
Samples: 3

Max nTPM: 37.4
Min nTPM: 30.9
Sample B Female 35.8
Sample C Male 37.4
Sample D Male 30.9
Substantia nigra
nTPM: 40.2
Samples: 4

Max nTPM: 60.7
Min nTPM: 27.9
Sample A Female 60.7
Sample B Female 35.0
Sample C Male 37.2
Sample D Male 27.9
Superior colliculi
nTPM: 57.8
Samples: 4

Max nTPM: 65.7
Min nTPM: 43.4
Sample A Female 63.6
Sample B Female 65.7
Sample C Male 58.6
Sample D Male 43.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 216.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 216.9
Samples: 4

Max nTPM: 240.0
Min nTPM: 196.4
Sample A Male 240.0
Sample B Male 208.0
Sample C Female 196.4
Sample D Female 223.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
386020 Antisense, RP_040804_01_A08, Mouse strain C57BL/6J (56 days, male) 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.