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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:1.9 nTPM
HPA:1.9 nTPM
GTEx:1.8 nTPM
FANTOM5:5.0 Scaled Tags Per Million
Pig:0.1 nTPM
Mouse:0.7 nTPM
Allen mouse:0.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA027175
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 1.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.6
1781 Male, age 74, unknown 1.9
1854 Male, age 80, left hemisphere 1.7
2288 Male, age 75, left hemisphere 1.7
2846 Female, age 79, unknown 1.7
2290 Female, age 72, unknown 1.6
2481 Female, age 94, left hemisphere 1.6
1857 Female, age 85, left hemisphere 1.5
2289 Male, age 61, right hemisphere 1.5
Claustrum
nTPM: 1.9
2196 Female, age 79, unknown 2.3
1956 Male, age 74, unknown 2.2
2284 Female, age 91, both hemispheres 1.9
2292 Female, age 85, both hemispheres 1.9
2392 Female, age 94, both hemispheres 1.9
2645 Female, age 72, unknown 1.8
2198 Male, age 80, both hemispheres 1.7
2491 Male, age 75, both hemispheres 1.7
2568 Male, age 61, both hemispheres 1.7
Globus pallidus, externus
nTPM: 1.7
2395 Male, age 75, both hemispheres 2.1
2567 Female, age 72, unknown 1.9
1996 Male, age 80, right hemisphere 1.6
2772 Female, age 79, unknown 1.5
2646 Male, age 61, right hemisphere 1.2
Globus pallidus, internus
nTPM: 1.8
2111 Female, age 85, right hemisphere 2.1
2566 Female, age 72, unknown 2.1
2287 Male, age 75, right hemisphere 1.9
2778 Female, age 91, both hemispheres 1.8
1818 Male, age 74, unknown 1.6
2483 Female, age 94, right hemisphere 1.6
2037 Male, age 80, right hemisphere 1.5
Nucleus accumbens
nTPM: 1.6
2732 Male, age 80, right hemisphere 1.8
1806 Female, age 85, left hemisphere 1.6
1856 Female, age 91, right hemisphere 1.6
2286 Male, age 75, left hemisphere 1.6
1783 Male, age 74, unknown 1.5
2698 Female, age 72, unknown 1.5
2824 Male, age 61, right hemisphere 1.5
2391 Female, age 94, left hemisphere 1.4
Nucleus basalis of Meynert
nTPM: 1.6
2393 Male, age 80, right hemisphere 1.8
2821 Male, age 75, both hemispheres 1.8
2484 Female, age 94, left hemisphere 1.6
2569 Male, age 61, both hemispheres 1.2
Nucleus of the diagonal band
nTPM: 1.5
2029 Male, age 61, right hemisphere 1.6
2195 Female, age 85, both hemispheres 1.6
2775 Male, age 80, right hemisphere 1.6
1812 Female, age 91, both hemispheres 1.5
1979 Male, age 74, unknown 1.4
Olfactory tubercle
nTPM: 1.7
1998 Female, age 91, both hemispheres 1.8
2487 Female, age 94, left hemisphere 1.8
1846 Male, age 80, right hemisphere 1.7
2856 Male, age 75, right hemisphere 1.6
Putamen
nTPM: 1.7
1829 Male, age 74, unknown 1.8
1838 Male, age 80, right hemisphere 1.8
1937 Female, age 91, right hemisphere 1.8
2489 Female, age 72, unknown 1.7
2466 Female, age 79, unknown 1.6
2482 Female, age 94, left hemisphere 1.5
2647 Male, age 75, left hemisphere 1.5
Septal nuclei
nTPM: 1.5
2394 Male, age 61, left hemisphere 2.0
2009 Female, age 91, both hemispheres 1.8
1960 Male, age 74, unknown 1.7
2031 Female, age 72, unknown 1.5
2199 Male, age 80, right hemisphere 1.5
2629 Female, age 94, right hemisphere 1.5
2059 Female, age 85, both hemispheres 1.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 1.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1.8
Samples: 246

Max nTPM: 3.9
Min nTPM: 0.5
Std nTPM: 0.6
Median nTPM: 1.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 3.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 3.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 3.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 3.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 3.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 3.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 3.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 3.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 3.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 3.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 3.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1.8
Samples: 246

Max nTPM: 4.6
Min nTPM: 0.4
Std nTPM: 0.6
Median nTPM: 1.7
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 4.6
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 4.4
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 4.1
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 3.8
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 3.1
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 3.0
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 3.0
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 2.9
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 2.8
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 2.8
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 2.8
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Brain - Putamen (basal ganglia)
Average nTPM: 1.8
Samples: 205

Max nTPM: 3.5
Min nTPM: 0.6
Std nTPM: 0.5
Median nTPM: 1.8
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 3.5
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 3.5
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 3.4
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 3.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 3.2
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 3.2
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 3.2
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 3.2
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 3.1
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 3.1
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 2.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 5.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2.6
FF:10164-103B2 76 years, female 2.6
Globus pallidus
Scaled Tags Per Million: 3.3
FF:10175-103C4 60 years, female 4.7
FF:10161-103A8 76 years, female 1.9
Nucleus accumbens
Scaled Tags Per Million: 5.0
FF:10037-101F1 23-56 years, mixed 5.0
Putamen
Scaled Tags Per Million: 4.2
FF:10176-103C5 60 years, female 4.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.1
Pig sample Sample description nTPM
Caudate
nTPM: 0.2
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.1
Sample A Female 0.2
Sample B Female 0.1
Sample C Male 0.1
Sample D Male 0.2
Putamen
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Female 0.2
Sample B Female 0.1
Sample C Male 0.1
Sample D Male 0.0
Septum
nTPM: 0.2
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.2
Sample C Male 0.1
Sample D Male 0.2
Ventral pallidum
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.1
Sample C Male 0.1
Sample D Male 0.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.5
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.4
Sample A Male 0.4
Sample B Male 0.6
Sample C Female 0.5
Sample D Female 0.4
Septum
nTPM: 0.7
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.6
Sample A Male 0.6
Sample B Male 1.0
Sample C Female 0.7
Sample D Female 0.6
Ventral forebrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.2
Sample A Male 0.4
Sample B Male 0.4
Sample C Female 0.2
Sample D Female 0.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.5
69752083 Antisense, RP_050505_01_B02, Mouse strain C57BL/6J (56 days, male) 1.0
81790716 Antisense, RP_090820_05_A07, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.9
69752083 Antisense, RP_050505_01_B02, Mouse strain C57BL/6J (56 days, male) 1.9
81790716 Antisense, RP_090820_05_A07, Mouse strain C57BL/6J (56 days, male) 0.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.