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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:12.4 nTPM
HPA:12.4 nTPM
GTEx:18.7 nTPM
FANTOM5:24.8 Scaled Tags Per Million
Pig:9.8 nTPM
Mouse:25.0 nTPM
Allen mouse:2.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA007989
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 12.4
Sample id Sample description nTPM
Hippocampus
nTPM: 11.9
1898 Male, age 80, left hemisphere 12.5
2529 Female, age 94, left hemisphere 12.5
2621 Female, age 67, right hemisphere 11.9
1855 Male, age 76, left hemisphere 11.5
1911 Female, age 85, right hemisphere 11.5
2148 Female, age 91, left hemisphere 11.5
Dentate gyrus
nTPM: 12.1
2528 Male, age 74, both hemispheres 12.6
2010 Male, age 76, both hemispheres 12.5
2530 Female, age 94, left hemisphere 12.2
1927 Female, age 91, both hemispheres 11.9
2246 Female, age 85, both hemispheres 11.8
2531 Female, age 67, both hemispheres 11.8
Entorhinal gyrus
nTPM: 12.0
2686 Male, age 75, right hemisphere 12.6
2117 Female, age 91, right hemisphere 12.4
2613 Female, age 94, left hemisphere 12.0
1938 Female, age 85, left hemisphere 11.8
2764 Male, age 80, right hemisphere 11.7
1787 Male, age 76, left hemisphere 11.3
Hippocampus, CA1
nTPM: 12.4
2527 Male, age 74, both hemispheres 12.7
2749 Male, age 80, left hemisphere 12.4
2082 Female, age 91, right hemisphere 12.3
2045 Male, age 76, both hemispheres 12.2
1873 Female, age 85, both hemispheres 12.1
Hippocampus, CA2
nTPM: 12.4
1940 Female, age 85, left hemisphere 13.2
1963 Male, age 80, left hemisphere 12.6
2249 Male, age 74, both hemispheres 12.6
1892 Male, age 76, both hemispheres 12.3
2113 Female, age 91, right hemisphere 12.0
2437 Female, age 94, left hemisphere 12.0
Hippocampus, CA3
nTPM: 12.1
2436 Male, age 74, both hemispheres 12.8
1891 Female, age 85, both hemispheres 12.3
2620 Female, age 94, left hemisphere 12.2
1867 Male, age 76, both hemispheres 12.0
2137 Male, age 80, left hemisphere 11.6
2861 Female, age 67, both hemispheres 11.5
Parahippocampal cortex
nTPM: 12.1
2693 Female, age 94, both hemispheres 12.8
2692 Male, age 74, both hemispheres 12.5
1933 Female, age 85, both hemispheres 12.3
2018 Male, age 76, both hemispheres 12.1
2245 Female, age 91, both hemispheres 12.1
2250 Female, age 67, right hemisphere 12.0
2532 Female, age 72, left hemisphere 12.0
1850 Male, age 80, both hemispheres 11.9
1990 Female, age 91, right hemisphere 11.9
2622 Female, age 67, right hemisphere 11.3
Perirhinal gyrus
nTPM: 12.0
1847 Female, age 91, left hemisphere 12.5
1794 Male, age 80, right hemisphere 12.2
2521 Female, age 94, right hemisphere 12.1
1841 Female, age 85, right hemisphere 11.8
2848 Male, age 76, right hemisphere 11.6
Subiculum
nTPM: 12.1
2042 Male, age 76, both hemispheres 12.6
2619 Male, age 74, both hemispheres 12.4
2729 Female, age 91, right hemisphere 12.4
1977 Female, age 85, both hemispheres 12.0
2438 Female, age 94, left hemisphere 12.0
1901 Male, age 80, both hemispheres 11.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 18.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 18.7
Samples: 197

Max nTPM: 35.5
Min nTPM: 8.9
Std nTPM: 4.9
Median nTPM: 18.0
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 35.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 33.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 33.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 33.8
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 32.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 31.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 31.3
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 30.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 30.2
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 30.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 28.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 24.8
FF:10169-103B7 60 years, female 28.2
FF:10153-102I9 76 years, female 21.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 9.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 9.8
Samples: 4

Max nTPM: 11.8
Min nTPM: 8.4
Sample A Female 11.8
Sample B Female 10.4
Sample C Male 8.4
Sample D Male 8.6
Entorhinal cortex
nTPM: 8.2
Samples: 4

Max nTPM: 10.5
Min nTPM: 5.9
Sample A Female 8.9
Sample B Female 10.5
Sample C Male 7.6
Sample D Male 5.9
Subiculum
nTPM: 8.8
Samples: 4

Max nTPM: 9.7
Min nTPM: 7.5
Sample A Female 9.7
Sample B Female 9.1
Sample C Male 7.5
Sample D Male 8.8
Ventral hippocampus
nTPM: 9.1
Samples: 4

Max nTPM: 10.5
Min nTPM: 7.5
Sample A Female 10.5
Sample B Female 7.5
Sample C Male 8.7
Sample D Male 9.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 25.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 22.2
Samples: 4

Max nTPM: 23.7
Min nTPM: 21.1
Sample A Male 21.5
Sample B Male 22.5
Sample C Female 23.7
Sample D Female 21.1
Hippocampal formation
nTPM: 25.0
Samples: 4

Max nTPM: 29.4
Min nTPM: 22.2
Sample A Male 29.4
Sample B Male 24.7
Sample C Female 22.2
Sample D Female 23.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.4
75774105 Antisense, RP_060530_01_B01, Mouse strain C57BL/6J (56 days, male) 2.4
75774636 Antisense, RP_060530_01_B01, Mouse strain C57BL/6J (56 days, male) 2.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.