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WASHC3
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.9 nTPM
HPA:43.9 nTPM
GTEx:45.0 nTPM
FANTOM5:50.6 Scaled Tags Per Million
Pig:32.8 nTPM
Mouse:29.8 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.3
2411 Female, age 72, unknown 43.1
1870 Female, age 42, unknown 42.3
1827 Male, age 72, unknown 42.0
2666 Male, age 74, left hemisphere 41.4
1833 Male, age 53, unknown 41.3
2219 Male, age 76, both hemispheres 41.0
2019 Male, age 18, unknown 40.7
2828 Female, age 72, unknown 40.5
1830 Male, age 51, unknown 40.4
2586 Male, age 75, left hemisphere 40.0
Dorsal raphe nucleus
nTPM: 41.6
2047 Male, age 72, unknown 42.5
2298 Female, age 72, unknown 42.1
1828 Male, age 53, unknown 41.9
2750 Male, age 76, both hemispheres 41.4
2016 Female, age 72, unknown 40.2
Inferior colliculus
nTPM: 40.9
2097 Female, age 72, unknown 41.6
1848 Female, age 42, unknown 41.2
1890 Male, age 53, unknown 40.4
2849 Male, age 72, unknown 40.4
Median raphe nucleus
nTPM: 43.9
2220 Male, age 76, midline 43.9
Pedunculopontine tegmental nucleus
nTPM: 42.1
2338 Male, age 61, both hemispheres 43.1
2334 Male, age 80, both hemispheres 42.2
1921 Female, age 85, both hemispheres 40.9
Periaquaductal grey, anterior
nTPM: 40.5
1947 Male, age 18, unknown 41.6
1795 Male, age 51, unknown 40.6
2502 Female, age 75, unknown 39.2
Periaquaductal grey, dorsal
nTPM: 40.7
2850 Male, age 76, both hemispheres 42.0
1831 Male, age 72, unknown 40.6
2464 Female, age 72, unknown 40.3
1840 Male, age 53, unknown 40.0
Periaquaductal grey, lateral
nTPM: 41.1
2272 Male, age 74, both hemispheres 42.6
2053 Male, age 18, unknown 40.8
2140 Male, age 76, both hemispheres 39.9
Pretectal area
nTPM: 41.2
1817 Female, age 42, unknown 42.3
2224 Female, age 72, unknown 42.0
1816 Male, age 51, unknown 41.8
2273 Male, age 74, both hemispheres 41.8
1815 Male, age 53, unknown 41.7
1944 Female, age 72, unknown 41.6
2667 Female, age 75, unknown 41.5
2825 Male, age 18, unknown 41.4
2407 Male, age 75, both hemispheres 41.1
2007 Male, age 72, unknown 40.2
2316 Male, age 76, right hemisphere 38.1
Red nucleus
nTPM: 41.3
1821 Female, age 72, unknown 43.1
1865 Male, age 51, unknown 42.3
1954 Female, age 42, unknown 42.2
1904 Male, age 53, unknown 41.7
2588 Male, age 74, left hemisphere 41.3
2725 Female, age 75, unknown 41.3
2503 Female, age 72, unknown 41.1
2769 Male, age 72, unknown 41.0
2227 Male, age 72, unknown 40.8
2785 Male, age 18, unknown 40.7
2823 Male, age 76, right hemisphere 40.5
2584 Male, age 75, left hemisphere 39.5
Substantia nigra
nTPM: 42.0
1889 Female, age 72, unknown 45.0
1916 Female, age 42, unknown 43.9
2241 Male, age 72, unknown 43.0
1851 Male, age 51, unknown 42.1
1941 Male, age 53, unknown 42.1
2590 Female, age 75, unknown 41.7
2409 Female, age 72, unknown 41.6
2699 Male, age 18, unknown 41.5
2665 Male, age 74, both hemispheres 40.0
2583 Male, age 75, right hemisphere 39.1
Superior colliculus
nTPM: 41.1
2668 Female, age 75, unknown 42.4
2664 Male, age 75, both hemispheres 41.3
2261 Male, age 18, unknown 41.2
1796 Male, age 53, unknown 41.1
2587 Male, age 74, left hemisphere 41.1
1995 Male, age 72, unknown 41.0
2087 Female, age 72, unknown 41.0
1839 Male, age 51, unknown 40.9
1895 Male, age 76, right hemisphere 40.8
1913 Female, age 42, unknown 40.6
Ventral tegmental area
nTPM: 42.1
1915 Female, age 42, unknown 43.5
2410 Female, age 72, unknown 43.1
2218 Male, age 76, both hemispheres 42.0
2223 Female, age 72, unknown 41.7
2021 Male, age 53, unknown 41.6
1942 Male, age 51, unknown 40.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.0
Samples: 139

Max nTPM: 98.9
Min nTPM: 25.6
Std nTPM: 11.0
Median nTPM: 42.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 98.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 77.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 76.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 69.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 66.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 66.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 65.9
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 65.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 63.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 62.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 62.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.6
FF:10158-103A5 76 years, female 50.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.8
Pig sample Sample description nTPM
Midbrain
nTPM: 30.0
Samples: 4

Max nTPM: 40.8
Min nTPM: 24.3
Sample A Female 40.8
Sample B Female 29.5
Sample C Male 25.3
Sample D Male 24.3
Periaqueductal gray
nTPM: 26.4
Samples: 3

Max nTPM: 28.2
Min nTPM: 22.9
Sample B Female 28.2
Sample C Male 22.9
Sample D Male 28.2
Substantia nigra
nTPM: 32.8
Samples: 4

Max nTPM: 36.4
Min nTPM: 28.6
Sample A Female 32.9
Sample B Female 28.6
Sample C Male 33.2
Sample D Male 36.4
Superior colliculi
nTPM: 28.9
Samples: 4

Max nTPM: 31.6
Min nTPM: 26.2
Sample A Female 29.6
Sample B Female 26.2
Sample C Male 28.0
Sample D Male 31.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.8
Samples: 4

Max nTPM: 32.9
Min nTPM: 27.6
Sample A Male 32.9
Sample B Male 28.8
Sample C Female 27.6
Sample D Female 29.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
68522344 Antisense, RP_050118_01_H04, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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