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TARDBP
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:77.2 nTPM
HPA:77.2 nTPM
GTEx:90.8 nTPM
FANTOM5:130.0 Scaled Tags Per Million
Pig:37.1 nTPM
Mouse:92.5 nTPM
Allen mouse:4.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 77.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 72.3
1830 Male, age 51, unknown 75.3
2019 Male, age 18, unknown 75.0
1833 Male, age 53, unknown 74.9
2411 Female, age 72, unknown 74.5
1870 Female, age 42, unknown 73.4
1827 Male, age 72, unknown 72.8
2828 Female, age 72, unknown 70.8
2219 Male, age 76, both hemispheres 69.2
2666 Male, age 74, left hemisphere 69.0
2586 Male, age 75, left hemisphere 68.0
Dorsal raphe nucleus
nTPM: 69.8
2750 Male, age 76, both hemispheres 72.0
1828 Male, age 53, unknown 71.6
2016 Female, age 72, unknown 71.6
2047 Male, age 72, unknown 67.7
2298 Female, age 72, unknown 66.1
Inferior colliculus
nTPM: 72.1
1890 Male, age 53, unknown 73.4
2849 Male, age 72, unknown 72.7
2097 Female, age 72, unknown 71.2
1848 Female, age 42, unknown 71.1
Median raphe nucleus
nTPM: 68.1
2220 Male, age 76, midline 68.1
Pedunculopontine tegmental nucleus
nTPM: 70.3
2334 Male, age 80, both hemispheres 71.7
2338 Male, age 61, both hemispheres 70.5
1921 Female, age 85, both hemispheres 68.7
Periaquaductal grey, anterior
nTPM: 70.4
2502 Female, age 75, unknown 73.3
1947 Male, age 18, unknown 71.3
1795 Male, age 51, unknown 66.5
Periaquaductal grey, dorsal
nTPM: 72.8
2850 Male, age 76, both hemispheres 76.5
1831 Male, age 72, unknown 72.5
2464 Female, age 72, unknown 71.5
1840 Male, age 53, unknown 70.8
Periaquaductal grey, lateral
nTPM: 70.2
2140 Male, age 76, both hemispheres 73.9
2053 Male, age 18, unknown 68.5
2272 Male, age 74, both hemispheres 68.2
Pretectal area
nTPM: 72.0
2407 Male, age 75, both hemispheres 75.5
1815 Male, age 53, unknown 74.8
1817 Female, age 42, unknown 74.6
1816 Male, age 51, unknown 74.1
2007 Male, age 72, unknown 73.3
1944 Female, age 72, unknown 72.8
2316 Male, age 76, right hemisphere 71.9
2825 Male, age 18, unknown 71.7
2273 Male, age 74, both hemispheres 69.6
2224 Female, age 72, unknown 67.2
2667 Female, age 75, unknown 66.6
Red nucleus
nTPM: 77.2
2503 Female, age 72, unknown 81.7
1904 Male, age 53, unknown 80.2
1865 Male, age 51, unknown 79.7
1821 Female, age 72, unknown 78.7
2823 Male, age 76, right hemisphere 78.7
2588 Male, age 74, left hemisphere 77.0
1954 Female, age 42, unknown 76.9
2227 Male, age 72, unknown 76.1
2785 Male, age 18, unknown 75.7
2769 Male, age 72, unknown 75.3
2725 Female, age 75, unknown 73.7
2584 Male, age 75, left hemisphere 72.3
Substantia nigra
nTPM: 72.4
2590 Female, age 75, unknown 76.9
2583 Male, age 75, right hemisphere 74.9
2409 Female, age 72, unknown 74.1
2699 Male, age 18, unknown 73.7
2665 Male, age 74, both hemispheres 72.8
2241 Male, age 72, unknown 71.6
1889 Female, age 72, unknown 71.2
1851 Male, age 51, unknown 71.1
1916 Female, age 42, unknown 70.1
1941 Male, age 53, unknown 67.9
Superior colliculus
nTPM: 72.5
1995 Male, age 72, unknown 75.8
1913 Female, age 42, unknown 75.6
1895 Male, age 76, right hemisphere 75.5
2587 Male, age 74, left hemisphere 74.0
2668 Female, age 75, unknown 74.0
2087 Female, age 72, unknown 71.9
1839 Male, age 51, unknown 71.4
2261 Male, age 18, unknown 70.6
1796 Male, age 53, unknown 69.1
2664 Male, age 75, both hemispheres 67.6
Ventral tegmental area
nTPM: 70.3
2223 Female, age 72, unknown 73.1
2410 Female, age 72, unknown 72.7
1942 Male, age 51, unknown 69.3
2021 Male, age 53, unknown 69.2
1915 Female, age 42, unknown 68.9
2218 Male, age 76, both hemispheres 68.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 90.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 90.8
Samples: 139

Max nTPM: 149.0
Min nTPM: 58.9
Std nTPM: 19.4
Median nTPM: 85.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 149.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 138.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 137.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 137.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 136.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 135.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 134.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 130.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 127.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 124.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 122.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 130.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 130.0
FF:10158-103A5 76 years, female 130.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 37.1
Pig sample Sample description nTPM
Midbrain
nTPM: 37.1
Samples: 4

Max nTPM: 43.2
Min nTPM: 33.9
Sample A Female 43.2
Sample B Female 37.0
Sample C Male 34.3
Sample D Male 33.9
Periaqueductal gray
nTPM: 34.6
Samples: 3

Max nTPM: 35.9
Min nTPM: 32.9
Sample B Female 35.9
Sample C Male 32.9
Sample D Male 34.9
Substantia nigra
nTPM: 35.2
Samples: 4

Max nTPM: 37.9
Min nTPM: 31.5
Sample A Female 35.6
Sample B Female 35.7
Sample C Male 31.5
Sample D Male 37.9
Superior colliculi
nTPM: 35.7
Samples: 4

Max nTPM: 36.3
Min nTPM: 35.1
Sample A Female 35.9
Sample B Female 35.4
Sample C Male 36.3
Sample D Male 35.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 92.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 92.6
Samples: 4

Max nTPM: 98.7
Min nTPM: 83.1
Sample A Male 83.1
Sample B Male 91.2
Sample C Female 97.2
Sample D Female 98.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.9
68157419 Antisense, RP_041116_02_F12, Mouse strain C57BL/6J (56 days, male) 4.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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