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ZSCAN18
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:71.6 nTPM
HPA:71.6 nTPM
GTEx:79.2 nTPM
FANTOM5:72.9 Scaled Tags Per Million
Mouse:8.6 nTPM
Allen mouse:1.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA024318
Glial cells High
Neuronal cells High


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 71.6
Sample id Sample description nTPM
Hippocampus
nTPM: 64.4
1898 Male, age 80, left hemisphere 71.4
1855 Male, age 76, left hemisphere 64.7
2148 Female, age 91, left hemisphere 63.1
1911 Female, age 85, right hemisphere 62.8
2529 Female, age 94, left hemisphere 62.7
2621 Female, age 67, right hemisphere 61.7
Dentate gyrus
nTPM: 67.7
2530 Female, age 94, left hemisphere 72.1
1927 Female, age 91, both hemispheres 71.0
2010 Male, age 76, both hemispheres 68.7
2246 Female, age 85, both hemispheres 66.5
2531 Female, age 67, both hemispheres 64.0
2528 Male, age 74, both hemispheres 63.9
Entorhinal gyrus
nTPM: 70.3
2764 Male, age 80, right hemisphere 85.5
2613 Female, age 94, left hemisphere 76.9
1787 Male, age 76, left hemisphere 69.8
1938 Female, age 85, left hemisphere 68.8
2117 Female, age 91, right hemisphere 61.7
2686 Male, age 75, right hemisphere 59.0
Hippocampus, CA1
nTPM: 69.1
2749 Male, age 80, left hemisphere 77.9
2045 Male, age 76, both hemispheres 73.1
1873 Female, age 85, both hemispheres 70.8
2082 Female, age 91, right hemisphere 64.7
2527 Male, age 74, both hemispheres 59.2
Hippocampus, CA2
nTPM: 64.3
1963 Male, age 80, left hemisphere 72.4
1892 Male, age 76, both hemispheres 69.3
2249 Male, age 74, both hemispheres 65.3
2437 Female, age 94, left hemisphere 60.1
2113 Female, age 91, right hemisphere 59.4
1940 Female, age 85, left hemisphere 59.3
Hippocampus, CA3
nTPM: 67.8
2620 Female, age 94, left hemisphere 84.1
2137 Male, age 80, left hemisphere 70.2
2436 Male, age 74, both hemispheres 66.4
2861 Female, age 67, both hemispheres 65.7
1867 Male, age 76, both hemispheres 62.3
1891 Female, age 85, both hemispheres 58.2
Parahippocampal cortex
nTPM: 64.1
1933 Female, age 85, both hemispheres 71.8
1850 Male, age 80, both hemispheres 70.3
2245 Female, age 91, both hemispheres 67.5
2532 Female, age 72, left hemisphere 65.6
2018 Male, age 76, both hemispheres 65.5
1990 Female, age 91, right hemisphere 63.7
2622 Female, age 67, right hemisphere 62.2
2250 Female, age 67, right hemisphere 61.1
2693 Female, age 94, both hemispheres 58.0
2692 Male, age 74, both hemispheres 55.5
Perirhinal gyrus
nTPM: 71.6
1794 Male, age 80, right hemisphere 80.6
1847 Female, age 91, left hemisphere 76.6
1841 Female, age 85, right hemisphere 71.5
2848 Male, age 76, right hemisphere 65.1
2521 Female, age 94, right hemisphere 64.3
Subiculum
nTPM: 59.6
1977 Female, age 85, both hemispheres 70.0
1901 Male, age 80, both hemispheres 62.2
2042 Male, age 76, both hemispheres 58.7
2619 Male, age 74, both hemispheres 57.9
2729 Female, age 91, right hemisphere 57.4
2438 Female, age 94, left hemisphere 51.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 79.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 79.2
Samples: 197

Max nTPM: 132.6
Min nTPM: 40.1
Std nTPM: 17.7
Median nTPM: 76.8
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 132.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 129.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 129.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 126.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 124.2
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 122.9
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 119.8
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 116.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 113.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 112.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 111.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 72.9
FF:10169-103B7 60 years, female 85.8
FF:10153-102I9 76 years, female 60.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 8.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 8.2
Samples: 4

Max nTPM: 9.2
Min nTPM: 7.6
Sample A Male 7.6
Sample B Male 7.8
Sample C Female 8.1
Sample D Female 9.2
Hippocampal formation
nTPM: 8.6
Samples: 4

Max nTPM: 10.0
Min nTPM: 7.1
Sample A Male 8.6
Sample B Male 10.0
Sample C Female 7.1
Sample D Female 8.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.5
70566106 Antisense, RP_050628_02_C09, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.