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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:70.0 nTPM
HPA:70.0 nTPM
GTEx:71.8 nTPM
FANTOM5:66.5 Scaled Tags Per Million
Mouse:10.2 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 70.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.9
2586 Male, age 75, left hemisphere 72.8
2411 Female, age 72, unknown 66.9
1827 Male, age 72, unknown 64.9
1870 Female, age 42, unknown 60.5
2828 Female, age 72, unknown 59.4
1833 Male, age 53, unknown 56.9
2219 Male, age 76, both hemispheres 54.7
1830 Male, age 51, unknown 54.2
2666 Male, age 74, left hemisphere 51.2
2019 Male, age 18, unknown 47.5
Dorsal raphe nucleus
nTPM: 65.7
2298 Female, age 72, unknown 81.1
2047 Male, age 72, unknown 66.1
2016 Female, age 72, unknown 63.1
2750 Male, age 76, both hemispheres 60.6
1828 Male, age 53, unknown 57.8
Inferior colliculus
nTPM: 55.6
2849 Male, age 72, unknown 59.5
2097 Female, age 72, unknown 57.3
1848 Female, age 42, unknown 53.2
1890 Male, age 53, unknown 52.4
Median raphe nucleus
nTPM: 68.2
2220 Male, age 76, midline 68.2
Pedunculopontine tegmental nucleus
nTPM: 55.6
1921 Female, age 85, both hemispheres 62.5
2334 Male, age 80, both hemispheres 57.9
2338 Male, age 61, both hemispheres 46.4
Periaquaductal grey, anterior
nTPM: 67.4
1947 Male, age 18, unknown 68.9
1795 Male, age 51, unknown 67.3
2502 Female, age 75, unknown 66.1
Periaquaductal grey, dorsal
nTPM: 65.0
1840 Male, age 53, unknown 73.6
2850 Male, age 76, both hemispheres 69.6
1831 Male, age 72, unknown 58.8
2464 Female, age 72, unknown 57.8
Periaquaductal grey, lateral
nTPM: 70.0
2272 Male, age 74, both hemispheres 72.7
2140 Male, age 76, both hemispheres 71.4
2053 Male, age 18, unknown 65.8
Pretectal area
nTPM: 59.8
2273 Male, age 74, both hemispheres 70.5
2224 Female, age 72, unknown 69.7
2825 Male, age 18, unknown 69.6
2667 Female, age 75, unknown 65.5
2316 Male, age 76, right hemisphere 59.2
1816 Male, age 51, unknown 56.4
1815 Male, age 53, unknown 55.6
2407 Male, age 75, both hemispheres 55.2
1944 Female, age 72, unknown 54.1
1817 Female, age 42, unknown 51.8
2007 Male, age 72, unknown 50.7
Red nucleus
nTPM: 56.8
2769 Male, age 72, unknown 61.3
2227 Male, age 72, unknown 60.3
1904 Male, age 53, unknown 58.8
2503 Female, age 72, unknown 58.4
1954 Female, age 42, unknown 58.1
2725 Female, age 75, unknown 57.3
1821 Female, age 72, unknown 57.1
2584 Male, age 75, left hemisphere 55.8
2588 Male, age 74, left hemisphere 55.5
1865 Male, age 51, unknown 54.8
2823 Male, age 76, right hemisphere 53.0
2785 Male, age 18, unknown 51.1
Substantia nigra
nTPM: 61.0
1916 Female, age 42, unknown 72.9
1851 Male, age 51, unknown 70.2
2699 Male, age 18, unknown 66.6
2241 Male, age 72, unknown 59.4
2583 Male, age 75, right hemisphere 59.1
1941 Male, age 53, unknown 58.7
2590 Female, age 75, unknown 57.4
2409 Female, age 72, unknown 57.1
1889 Female, age 72, unknown 56.5
2665 Male, age 74, both hemispheres 51.6
Superior colliculus
nTPM: 58.4
1796 Male, age 53, unknown 67.2
2261 Male, age 18, unknown 65.0
2664 Male, age 75, both hemispheres 63.9
1839 Male, age 51, unknown 59.0
2587 Male, age 74, left hemisphere 58.2
2668 Female, age 75, unknown 56.0
2087 Female, age 72, unknown 54.8
1995 Male, age 72, unknown 54.7
1913 Female, age 42, unknown 53.7
1895 Male, age 76, right hemisphere 51.9
Ventral tegmental area
nTPM: 65.4
1915 Female, age 42, unknown 69.6
2410 Female, age 72, unknown 66.2
1942 Male, age 51, unknown 65.7
2021 Male, age 53, unknown 65.0
2223 Female, age 72, unknown 63.1
2218 Male, age 76, both hemispheres 63.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 71.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 71.8
Samples: 139

Max nTPM: 206.4
Min nTPM: 42.1
Std nTPM: 20.3
Median nTPM: 69.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 206.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 150.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 142.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 125.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 111.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 104.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 102.7
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 100.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 97.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 96.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 94.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 66.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 66.5
FF:10158-103A5 76 years, female 66.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.2
Samples: 4

Max nTPM: 10.8
Min nTPM: 9.8
Sample A Male 9.9
Sample B Male 10.8
Sample C Female 10.3
Sample D Female 9.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
70566106 Antisense, RP_050628_02_C09, Mouse strain C57BL/6J (56 days, male) 0.8

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