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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:36.6 nTPM
HPA:36.6 nTPM
GTEx:38.5 nTPM
FANTOM5:97.5 Scaled Tags Per Million
Pig:40.0 nTPM
Mouse:62.0 nTPM
Allen mouse:16.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA051280Antibody HPA056813Antibody CAB005355
Glial cells HighLowHigh
Neuronal cells HighMediumHigh







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 36.6
Sample id Sample description nTPM
Hippocampus
nTPM: 36.6
2529 Female, age 94, left hemisphere 39.8
2148 Female, age 91, left hemisphere 38.0
1911 Female, age 85, right hemisphere 37.7
2621 Female, age 67, right hemisphere 36.2
1898 Male, age 80, left hemisphere 35.6
1855 Male, age 76, left hemisphere 32.3
Dentate gyrus
nTPM: 36.6
2531 Female, age 67, both hemispheres 39.6
1927 Female, age 91, both hemispheres 38.7
2528 Male, age 74, both hemispheres 36.7
2010 Male, age 76, both hemispheres 36.6
2530 Female, age 94, left hemisphere 35.5
2246 Female, age 85, both hemispheres 32.9
Entorhinal gyrus
nTPM: 32.9
2117 Female, age 91, right hemisphere 37.8
2764 Male, age 80, right hemisphere 37.8
1938 Female, age 85, left hemisphere 34.4
1787 Male, age 76, left hemisphere 32.4
2613 Female, age 94, left hemisphere 28.3
2686 Male, age 75, right hemisphere 26.4
Hippocampus, CA1
nTPM: 35.4
2045 Male, age 76, both hemispheres 41.0
2527 Male, age 74, both hemispheres 37.0
1873 Female, age 85, both hemispheres 35.1
2749 Male, age 80, left hemisphere 35.1
2082 Female, age 91, right hemisphere 28.7
Hippocampus, CA2
nTPM: 33.3
2249 Male, age 74, both hemispheres 41.2
1892 Male, age 76, both hemispheres 33.6
1940 Female, age 85, left hemisphere 32.1
2437 Female, age 94, left hemisphere 32.1
1963 Male, age 80, left hemisphere 31.4
2113 Female, age 91, right hemisphere 29.5
Hippocampus, CA3
nTPM: 35.1
2620 Female, age 94, left hemisphere 39.2
1867 Male, age 76, both hemispheres 37.0
1891 Female, age 85, both hemispheres 34.6
2137 Male, age 80, left hemisphere 34.1
2436 Male, age 74, both hemispheres 33.5
2861 Female, age 67, both hemispheres 32.4
Parahippocampal cortex
nTPM: 32.0
2532 Female, age 72, left hemisphere 36.4
1990 Female, age 91, right hemisphere 34.9
1850 Male, age 80, both hemispheres 33.9
2245 Female, age 91, both hemispheres 33.3
1933 Female, age 85, both hemispheres 33.2
2018 Male, age 76, both hemispheres 33.0
2250 Female, age 67, right hemisphere 32.2
2622 Female, age 67, right hemisphere 29.6
2692 Male, age 74, both hemispheres 28.3
2693 Female, age 94, both hemispheres 25.0
Perirhinal gyrus
nTPM: 34.2
1794 Male, age 80, right hemisphere 38.4
1847 Female, age 91, left hemisphere 34.2
2521 Female, age 94, right hemisphere 33.8
1841 Female, age 85, right hemisphere 33.6
2848 Male, age 76, right hemisphere 30.9
Subiculum
nTPM: 34.7
1977 Female, age 85, both hemispheres 36.9
2729 Female, age 91, right hemisphere 35.7
2042 Male, age 76, both hemispheres 35.2
1901 Male, age 80, both hemispheres 33.8
2438 Female, age 94, left hemisphere 33.7
2619 Male, age 74, both hemispheres 33.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 38.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 38.5
Samples: 197

Max nTPM: 60.8
Min nTPM: 19.5
Std nTPM: 7.5
Median nTPM: 38.7
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 60.8
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 55.3
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 54.8
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 54.3
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 53.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 53.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 52.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 52.5
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 52.4
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 51.8
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 51.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 97.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 97.5
FF:10169-103B7 60 years, female 100.4
FF:10153-102I9 76 years, female 94.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 40.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 40.0
Samples: 4

Max nTPM: 47.3
Min nTPM: 37.0
Sample A Female 47.3
Sample B Female 37.0
Sample C Male 37.5
Sample D Male 38.1
Entorhinal cortex
nTPM: 32.2
Samples: 4

Max nTPM: 36.0
Min nTPM: 26.9
Sample A Female 36.0
Sample B Female 32.5
Sample C Male 33.5
Sample D Male 26.9
Subiculum
nTPM: 36.5
Samples: 4

Max nTPM: 46.5
Min nTPM: 30.5
Sample A Female 46.5
Sample B Female 34.5
Sample C Male 34.3
Sample D Male 30.5
Ventral hippocampus
nTPM: 34.4
Samples: 4

Max nTPM: 38.0
Min nTPM: 31.0
Sample A Female 36.2
Sample B Female 32.4
Sample C Male 38.0
Sample D Male 31.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 62.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 62.0
Samples: 4

Max nTPM: 64.6
Min nTPM: 59.9
Sample A Male 60.4
Sample B Male 59.9
Sample C Female 63.0
Sample D Female 64.6
Hippocampal formation
nTPM: 60.1
Samples: 4

Max nTPM: 63.1
Min nTPM: 55.9
Sample A Male 60.9
Sample B Male 63.1
Sample C Female 60.3
Sample D Female 55.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 16.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 16.4
532636 Antisense, RP_040810_02_G11, Mouse strain C57BL/6J (56 days, male) 25.9
70919448 Antisense, RP_050713_01_D03, Mouse strain C57BL/6J (56 days, male) 6.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.