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HPCA
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:326.8 nTPM
HPA:326.8 nTPM
GTEx:412.6 nTPM
FANTOM5:318.9 Scaled Tags Per Million
Pig:990.7 nTPM
Mouse:2290.3 nTPM
Allen mouse:22.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA043245Antibody CAB012340
Glial cells Not detectedNot detected
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 326.8
Sample id Sample description nTPM
Hippocampus
nTPM: 250.9
2621 Female, age 67, right hemisphere 308.8
1855 Male, age 76, left hemisphere 307.1
2148 Female, age 91, left hemisphere 291.3
1898 Male, age 80, left hemisphere 269.3
1911 Female, age 85, right hemisphere 200.2
2529 Female, age 94, left hemisphere 128.9
Dentate gyrus
nTPM: 249.5
1927 Female, age 91, both hemispheres 396.0
2530 Female, age 94, left hemisphere 313.7
2010 Male, age 76, both hemispheres 281.0
2531 Female, age 67, both hemispheres 200.4
2246 Female, age 85, both hemispheres 156.5
2528 Male, age 74, both hemispheres 149.1
Entorhinal gyrus
nTPM: 96.5
2613 Female, age 94, left hemisphere 131.5
1787 Male, age 76, left hemisphere 111.1
1938 Female, age 85, left hemisphere 104.5
2764 Male, age 80, right hemisphere 96.0
2686 Male, age 75, right hemisphere 72.5
2117 Female, age 91, right hemisphere 63.6
Hippocampus, CA1
nTPM: 326.8
2749 Male, age 80, left hemisphere 783.2
2045 Male, age 76, both hemispheres 254.7
1873 Female, age 85, both hemispheres 251.8
2527 Male, age 74, both hemispheres 232.1
2082 Female, age 91, right hemisphere 111.9
Hippocampus, CA2
nTPM: 214.4
1963 Male, age 80, left hemisphere 407.5
1892 Male, age 76, both hemispheres 301.8
2249 Male, age 74, both hemispheres 183.1
2437 Female, age 94, left hemisphere 163.7
2113 Female, age 91, right hemisphere 129.3
1940 Female, age 85, left hemisphere 101.0
Hippocampus, CA3
nTPM: 286.0
2137 Male, age 80, left hemisphere 607.6
2620 Female, age 94, left hemisphere 285.6
2861 Female, age 67, both hemispheres 270.5
1867 Male, age 76, both hemispheres 255.0
2436 Male, age 74, both hemispheres 176.1
1891 Female, age 85, both hemispheres 121.2
Parahippocampal cortex
nTPM: 105.8
2245 Female, age 91, both hemispheres 214.1
2018 Male, age 76, both hemispheres 116.2
1850 Male, age 80, both hemispheres 105.7
2622 Female, age 67, right hemisphere 93.0
1933 Female, age 85, both hemispheres 92.3
2250 Female, age 67, right hemisphere 91.3
2532 Female, age 72, left hemisphere 90.5
1990 Female, age 91, right hemisphere 86.8
2693 Female, age 94, both hemispheres 86.5
2692 Male, age 74, both hemispheres 81.5
Perirhinal gyrus
nTPM: 103.4
1847 Female, age 91, left hemisphere 117.5
1794 Male, age 80, right hemisphere 112.0
1841 Female, age 85, right hemisphere 105.7
2848 Male, age 76, right hemisphere 94.1
2521 Female, age 94, right hemisphere 87.9
Subiculum
nTPM: 144.1
1901 Male, age 80, both hemispheres 272.6
2042 Male, age 76, both hemispheres 226.8
2729 Female, age 91, right hemisphere 115.0
2438 Female, age 94, left hemisphere 92.0
1977 Female, age 85, both hemispheres 80.5
2619 Male, age 74, both hemispheres 77.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 412.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 412.6
Samples: 197

Max nTPM: 1837.4
Min nTPM: 12.9
Std nTPM: 328.1
Median nTPM: 303.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 1837.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 1360.5
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 1356.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 1232.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 1199.3
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 1089.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 1082.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 1065.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 1038.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 1031.4
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 1030.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 318.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 318.9
FF:10169-103B7 60 years, female 584.9
FF:10153-102I9 76 years, female 53.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 990.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 990.8
Samples: 4

Max nTPM: 1690.7
Min nTPM: 356.8
Sample A Female 1690.7
Sample B Female 1082.7
Sample C Male 356.8
Sample D Male 832.8
Entorhinal cortex
nTPM: 127.9
Samples: 4

Max nTPM: 160.6
Min nTPM: 110.1
Sample A Female 160.6
Sample B Female 123.0
Sample C Male 117.9
Sample D Male 110.1
Subiculum
nTPM: 73.3
Samples: 4

Max nTPM: 121.3
Min nTPM: 45.9
Sample A Female 121.3
Sample B Female 67.4
Sample C Male 45.9
Sample D Male 58.5
Ventral hippocampus
nTPM: 661.4
Samples: 4

Max nTPM: 1294.6
Min nTPM: 193.6
Sample A Female 768.3
Sample B Female 193.6
Sample C Male 389.2
Sample D Male 1294.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 2290.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 538.3
Samples: 4

Max nTPM: 729.0
Min nTPM: 351.8
Sample A Male 572.6
Sample B Male 499.9
Sample C Female 729.0
Sample D Female 351.8
Hippocampal formation
nTPM: 2290.3
Samples: 4

Max nTPM: 3007.3
Min nTPM: 1829.7
Sample A Male 1829.7
Sample B Male 2339.3
Sample C Female 3007.3
Sample D Female 1984.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 22.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 22.3
75750508 Antisense, RP_060518_04_H10, Mouse strain C57BL/6J (56 days, male) 22.3
72129291 Antisense, RP_051017_03_F07, Mouse strain C57BL/6J (56 days, male) 22.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.