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SLC66A2
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:37.0 nTPM
HPA:37.0 nTPM
GTEx:60.7 nTPM
FANTOM5:29.5 Scaled Tags Per Million
Pig:25.6 nTPM
Mouse:25.5 nTPM
Allen mouse:0.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA051666
Glial cells Not detected
Neuronal cells Medium


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 37.0
Sample id Sample description nTPM
Hippocampus
nTPM: 35.6
2621 Female, age 67, right hemisphere 39.7
1898 Male, age 80, left hemisphere 37.8
2148 Female, age 91, left hemisphere 36.1
1911 Female, age 85, right hemisphere 34.2
1855 Male, age 76, left hemisphere 33.6
2529 Female, age 94, left hemisphere 32.3
Dentate gyrus
nTPM: 36.2
2530 Female, age 94, left hemisphere 42.3
1927 Female, age 91, both hemispheres 41.7
2010 Male, age 76, both hemispheres 35.0
2531 Female, age 67, both hemispheres 33.3
2528 Male, age 74, both hemispheres 33.1
2246 Female, age 85, both hemispheres 31.7
Entorhinal gyrus
nTPM: 33.5
2613 Female, age 94, left hemisphere 38.7
2764 Male, age 80, right hemisphere 35.8
1938 Female, age 85, left hemisphere 34.1
2686 Male, age 75, right hemisphere 33.1
1787 Male, age 76, left hemisphere 31.5
2117 Female, age 91, right hemisphere 27.8
Hippocampus, CA1
nTPM: 37.0
2749 Male, age 80, left hemisphere 49.8
1873 Female, age 85, both hemispheres 44.9
2527 Male, age 74, both hemispheres 36.6
2082 Female, age 91, right hemisphere 29.5
2045 Male, age 76, both hemispheres 24.2
Hippocampus, CA2
nTPM: 36.9
1963 Male, age 80, left hemisphere 54.3
1892 Male, age 76, both hemispheres 40.2
2437 Female, age 94, left hemisphere 33.7
2113 Female, age 91, right hemisphere 31.7
2249 Male, age 74, both hemispheres 31.7
1940 Female, age 85, left hemisphere 29.7
Hippocampus, CA3
nTPM: 35.6
2861 Female, age 67, both hemispheres 46.3
2436 Male, age 74, both hemispheres 39.8
2137 Male, age 80, left hemisphere 38.0
2620 Female, age 94, left hemisphere 30.5
1891 Female, age 85, both hemispheres 29.6
1867 Male, age 76, both hemispheres 29.4
Parahippocampal cortex
nTPM: 29.8
2692 Male, age 74, both hemispheres 32.9
2245 Female, age 91, both hemispheres 31.9
1933 Female, age 85, both hemispheres 31.7
2622 Female, age 67, right hemisphere 31.7
1990 Female, age 91, right hemisphere 31.6
2532 Female, age 72, left hemisphere 28.8
2250 Female, age 67, right hemisphere 28.1
1850 Male, age 80, both hemispheres 27.7
2693 Female, age 94, both hemispheres 27.6
2018 Male, age 76, both hemispheres 26.2
Perirhinal gyrus
nTPM: 28.9
1847 Female, age 91, left hemisphere 32.9
2521 Female, age 94, right hemisphere 30.0
1794 Male, age 80, right hemisphere 29.8
1841 Female, age 85, right hemisphere 28.7
2848 Male, age 76, right hemisphere 23.0
Subiculum
nTPM: 28.7
1977 Female, age 85, both hemispheres 31.7
1901 Male, age 80, both hemispheres 31.2
2619 Male, age 74, both hemispheres 30.3
2729 Female, age 91, right hemisphere 28.6
2042 Male, age 76, both hemispheres 27.1
2438 Female, age 94, left hemisphere 23.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 60.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 60.7
Samples: 197

Max nTPM: 160.4
Min nTPM: 18.2
Std nTPM: 25.8
Median nTPM: 57.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 160.4
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 142.6
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 138.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 133.4
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 125.3
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 112.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 110.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 110.5
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 109.6
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 108.4
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 106.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 29.5
FF:10169-103B7 60 years, female 34.5
FF:10153-102I9 76 years, female 24.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 25.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 25.6
Samples: 4

Max nTPM: 27.9
Min nTPM: 22.4
Sample A Female 27.9
Sample B Female 26.7
Sample C Male 22.4
Sample D Male 25.5
Entorhinal cortex
nTPM: 19.9
Samples: 4

Max nTPM: 23.2
Min nTPM: 16.9
Sample A Female 16.9
Sample B Female 21.6
Sample C Male 23.2
Sample D Male 17.7
Subiculum
nTPM: 17.4
Samples: 4

Max nTPM: 20.1
Min nTPM: 15.2
Sample A Female 20.1
Sample B Female 16.0
Sample C Male 18.4
Sample D Male 15.2
Ventral hippocampus
nTPM: 23.2
Samples: 4

Max nTPM: 26.3
Min nTPM: 19.2
Sample A Female 21.5
Sample B Female 19.2
Sample C Male 26.3
Sample D Male 25.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 25.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 16.5
Samples: 4

Max nTPM: 18.0
Min nTPM: 14.6
Sample A Male 16.3
Sample B Male 17.1
Sample C Female 18.0
Sample D Female 14.6
Hippocampal formation
nTPM: 25.5
Samples: 4

Max nTPM: 27.6
Min nTPM: 22.5
Sample A Male 22.5
Sample B Male 25.8
Sample C Female 27.6
Sample D Female 26.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.3
70927829 Antisense, RP_050725_01_B05, Mouse strain C57BL/6J (56 days, male) 0.3
413790 Antisense, RP_040809_01_D12, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.