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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:355.9 nTPM
HPA:355.9 nTPM
GTEx:310.8 nTPM
FANTOM5:623.9 Scaled Tags Per Million
Pig:222.3 nTPM
Mouse:355.3 nTPM
Allen mouse:2.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 355.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 342.3
1870 Female, age 42, unknown 359.8
2019 Male, age 18, unknown 355.3
1830 Male, age 51, unknown 351.2
2586 Male, age 75, left hemisphere 349.2
1833 Male, age 53, unknown 346.5
2411 Female, age 72, unknown 344.7
2666 Male, age 74, left hemisphere 341.3
2219 Male, age 76, both hemispheres 327.3
1827 Male, age 72, unknown 323.9
2828 Female, age 72, unknown 323.2
Dorsal raphe nucleus
nTPM: 324.0
2750 Male, age 76, both hemispheres 342.3
2016 Female, age 72, unknown 334.6
1828 Male, age 53, unknown 322.2
2047 Male, age 72, unknown 319.9
2298 Female, age 72, unknown 300.8
Inferior colliculus
nTPM: 325.4
1848 Female, age 42, unknown 333.7
1890 Male, age 53, unknown 328.0
2849 Male, age 72, unknown 320.2
2097 Female, age 72, unknown 319.9
Median raphe nucleus
nTPM: 322.8
2220 Male, age 76, midline 322.8
Pedunculopontine tegmental nucleus
nTPM: 328.7
2334 Male, age 80, both hemispheres 330.5
1921 Female, age 85, both hemispheres 329.7
2338 Male, age 61, both hemispheres 325.8
Periaquaductal grey, anterior
nTPM: 331.5
2502 Female, age 75, unknown 349.5
1947 Male, age 18, unknown 334.8
1795 Male, age 51, unknown 310.1
Periaquaductal grey, dorsal
nTPM: 321.9
2464 Female, age 72, unknown 331.2
1840 Male, age 53, unknown 322.5
2850 Male, age 76, both hemispheres 320.1
1831 Male, age 72, unknown 313.7
Periaquaductal grey, lateral
nTPM: 313.8
2053 Male, age 18, unknown 322.1
2140 Male, age 76, both hemispheres 312.6
2272 Male, age 74, both hemispheres 306.5
Pretectal area
nTPM: 330.8
2007 Male, age 72, unknown 354.3
1815 Male, age 53, unknown 349.0
1817 Female, age 42, unknown 341.8
1944 Female, age 72, unknown 339.4
2316 Male, age 76, right hemisphere 336.0
2407 Male, age 75, both hemispheres 336.0
1816 Male, age 51, unknown 332.1
2825 Male, age 18, unknown 319.9
2667 Female, age 75, unknown 313.8
2224 Female, age 72, unknown 308.6
2273 Male, age 74, both hemispheres 308.1
Red nucleus
nTPM: 355.9
2503 Female, age 72, unknown 377.0
1821 Female, age 72, unknown 375.6
1904 Male, age 53, unknown 366.2
1865 Male, age 51, unknown 361.7
1954 Female, age 42, unknown 360.2
2588 Male, age 74, left hemisphere 358.0
2785 Male, age 18, unknown 354.2
2769 Male, age 72, unknown 350.6
2823 Male, age 76, right hemisphere 348.3
2227 Male, age 72, unknown 347.7
2725 Female, age 75, unknown 341.4
2584 Male, age 75, left hemisphere 329.8
Substantia nigra
nTPM: 333.6
2409 Female, age 72, unknown 346.0
1851 Male, age 51, unknown 344.9
1889 Female, age 72, unknown 344.9
2241 Male, age 72, unknown 344.2
2583 Male, age 75, right hemisphere 338.0
2590 Female, age 75, unknown 332.2
2699 Male, age 18, unknown 323.6
1916 Female, age 42, unknown 321.5
1941 Male, age 53, unknown 321.0
2665 Male, age 74, both hemispheres 319.8
Superior colliculus
nTPM: 336.6
1913 Female, age 42, unknown 359.0
1995 Male, age 72, unknown 349.5
2668 Female, age 75, unknown 349.0
1895 Male, age 76, right hemisphere 338.5
2587 Male, age 74, left hemisphere 335.0
1839 Male, age 51, unknown 334.4
2261 Male, age 18, unknown 328.8
2087 Female, age 72, unknown 328.0
2664 Male, age 75, both hemispheres 323.0
1796 Male, age 53, unknown 321.0
Ventral tegmental area
nTPM: 326.7
1915 Female, age 42, unknown 333.9
2223 Female, age 72, unknown 332.6
2410 Female, age 72, unknown 332.0
1942 Male, age 51, unknown 324.1
2021 Male, age 53, unknown 320.7
2218 Male, age 76, both hemispheres 317.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 310.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 310.8
Samples: 139

Max nTPM: 880.5
Min nTPM: 151.4
Std nTPM: 125.7
Median nTPM: 272.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 880.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 840.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 748.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 609.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 578.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 569.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 549.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 537.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 536.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 529.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 503.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 623.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 623.9
FF:10158-103A5 76 years, female 623.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 222.3
Pig sample Sample description nTPM
Midbrain
nTPM: 222.3
Samples: 4

Max nTPM: 305.4
Min nTPM: 172.6
Sample A Female 305.4
Sample B Female 237.0
Sample C Male 172.6
Sample D Male 174.1
Periaqueductal gray
nTPM: 169.4
Samples: 3

Max nTPM: 178.1
Min nTPM: 152.8
Sample B Female 177.4
Sample C Male 152.8
Sample D Male 178.1
Substantia nigra
nTPM: 208.8
Samples: 4

Max nTPM: 252.5
Min nTPM: 169.2
Sample A Female 230.9
Sample B Female 169.2
Sample C Male 182.5
Sample D Male 252.5
Superior colliculi
nTPM: 189.8
Samples: 4

Max nTPM: 215.5
Min nTPM: 124.5
Sample A Female 208.1
Sample B Female 124.5
Sample C Male 211.2
Sample D Male 215.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 355.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 355.3
Samples: 4

Max nTPM: 374.7
Min nTPM: 345.9
Sample A Male 345.9
Sample B Male 349.5
Sample C Female 374.7
Sample D Female 351.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
961 Antisense, RP_Baylor_103391, Mouse strain C57BL/6J (56 days, male) 2.6
962 Antisense, RP_Baylor_103391, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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